Gene detail

Detailed information of CsqKR_Scaf403_4.41 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf403_4.41	AMINO ACID TRANSPORTER	chr3	21627361	21643746	+

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf403_4.41

ATGGATGTACCTCAGTGTGAAGCCAAACGTGACAGAGACAGTATTCCTAAAAGATCGCTGGGATCCGGTATGCGGGGCAGTGTGCCTGCTGTTTCATCGGACGTTGCTATGGAAACTAATATTTCTATGGGGAAGAACGTGGGGCTAGCCAGTGGCACATCATTAATAGTGGGAACTATCATAGGGTCAGGTATATTTATCTCTCCAAAAGGAGTTCTGCAAAACACTGGATCAGTTGGTCTTTGTCTGCTGGTGTGGGCCGGTTCAGGAATTATAGCACTTCTAGGTGGTCTGGTGTATGCTGAGCTAGGTATGGTTGTTAAGAAGTCGGGAGGTGAATATGCTTACATAAGAGAAGCTTTCGGTAACGTGCCCGCCTTCCTGTACGCCTGGACGACAGTGATCGTGACGAGGACGTCCTCAATAGCTATAATTAGTCTGACCTTTGCGGAATACACGGCCTCTTTGTTTGAAAGGTGTGGTCAGCCTGATACACCAAAGAAACTAGTAGCTGCCATTGTCCTAGTAACTATTGCGCTAGTAAACAGCTACAGTGTAAATCTGGCGGCAAGAGTTCAAGTGTTCTTCACCGTGGCAAAAGTTGTCGCCCTGATTGTTATTATCATCGGTGGAATTGTTAAACTGGCTCAAGGCTGGGTATATGAAATAGGAACTGGATTTACAGACACAGCCGATTCTCCTACAGCGATAGCTCTTTCCTTTTACAGCGCCCTCTGGGCCTACGACGGTTGGAACAATCTGAACTATGTTACAGAAGAATTACAAAATCCTAGAAGAAATTTGCCTCTAGCTAATATTGGCGGAGTTCTCTTAGTTATGGCTGCTTATATTTTGACAAATGTTTCCTACCTCACAGTGATGTCCAAACAAGAAATGCTGGATACCACAGCTGTTGCAGTGCTGTGGGCTGACAGAGTTATCGGCGCTGCTGCAATAATTATTCCAATCTCTGTGATGGTGTCAACGTTTGGTGCAGCCAATGGTTCAGCCTTCGCAACAAGCCGAATTGCATTTGTCGCTGCCAGAGACAACAACCTGCCTCAGGTCCTGTCCTTCATACACTACAAACGACGCACACCTCTCCCGTCTATGCTTTTCACTTGTTTCGTGGCTCTTCTGATGATCATACCAGGAAACATTGGCGGTCTCATACAGTTTTTTAGTTTTACTTCTTGGATGTTTTATGGGTTGACGTTTACTTCACTTGTTATACTTAGATACACGAAGAAGGACGTTGAAAGACCGTACAAGGTTCCTCTTGTCATTCCAGTTCTGATGATGTTTGTGTCTCTGTACCTCGTCATCGCTCCAGTCATAAATGAACCACGGATTGAATTCCTATACGCTTTCCTCTTCATTCTAGGAGGTCTTATTTTCTACCTGTTAAACACTGGTCCGGACATTGACCTTGTCAGTAAACAGTACGTCCGAATAGAAAACGTTGACTGGTCAGAACAGCGAACCGCGCTCACCTGTCATCAGTTGTTTGAACTATCCTGCAGCTTTGGGTCATTATTAAAAAAAAGAGGTATTAAACCTGGAAACGTCGTCTGCAACACACTTCCAAATTCACTGGAAATGGTCGTTTGTGATTTTGGTACCCTAGCAGCAGGTGGCGTCATCTTGAACAAGACTGCCTACCTTTCAGATGGCTCTGATCTTTGTTATATGTTAAATACTTCGAAATGTAAAATAATCATAGCGGATCCGAATCAAACTCCAAATGACTGGAATATCCTTAAAATGCAAATTGACGACATTTCCGAAGACGATCGTATTACATCTGAAAAATTACCTTTCCTTGAAAGTGTCATTCTCGCTCCAGTTACAAATGGAAATGATGAATTTATTCTACGACTCCAAGAAGAAGATTCTTATTTATATACCTGTGGTTCACCGTCAGACGCTGGAACCATCTGGATGACGTCTGGTACCACCGGACTTCCCAAACTGATCCTGACTTCTCACAACTCATTACTAATAAATGCTCGCATCTGGGCATCCATAATGAATGAAAAATTCAATTCGATATTATTCAATGATACTGCTATGGGACATGCATCTTCTTTTGCCTTTTCTTTTCTTGCATCCTGCGCAAAAAGGGTTTTGATTGATCGACGCTTCCAACTTCCTTTAGATTTAGAGAAGTTTATCTGGGAAGTGGTCTGCTCAGAGGAATGCACTGCAGCTTTTATGTCTCCTCTTTTGTTCAAAGCAATTTTAAGAAGAACGGATGTTTTAGAAAGAAACAACTATCTTCTAGACGTTATGTGTGTTGCTGGACAACCTGTGCGAAAGGAATGGTCAGATTTAATAGGTAAAATGACACGGTCCGTTTGTCTGGTTTACGGCTTTTCAGAAATGGGGTACTGTACTTCGATACTTTGTCGGACACCGTCAGAGATGTCTGATTACATTGCTGGGTTTCTGTCTGCAGAGGGTATAAAGCTGAAGGTGGTTAAGGATAATTTACAAGAAACTGAAGCAGGAGAACAAGGTAATCTACTGGTTCACTCTAACTGGATGTTCAGAGGCTACACTGGATATGAGGAACAGAACAAGTCAAAGTTTACAGAAGATGGATGGTTCAAAACCGATGATCTGGCTTTCAGGAACAACGAAGGATGTCTGTACGTTGTATGTCGAAAGTCTGACGCTATAGCAAGAGGAGCATGCACTGTATATCCGTCCTATTATGAAACTGTCATAGGCTCGTTACCAACCGTCGCCGAAGTCATCGCTGTCCCCATGCCAGACAAAGACCTTGGCAATGAAATATGCGCTTGCGTCATTTTTAATCACGAATTTATCTATAATGAAAACGAGGTGGCAGAAATATGTGATTCGCTGTTCATAAAAGGGTCTGATATTCCAGAACCACGATATTACATGGTGATGAAAAAGTTCCCAGAATTATCATCGGGAAAGCCCGACAAAAAGCAGCTCATAAAAATGGCAATGGAAAAATTTAATTTGTTGTGA

Transcript

CsqKR_Scaf403_4.41

GGAATTGCGTGCACGAAGTGAAAAGTGGAAACTAATCGGAGTCTGCAGTCCACCAGTGATTTATGAACTGATGACAATGAATGCTTGACCATCAACACGTCGCCTGACTTTTCAAGAGATATCAACGACTTCAGTGATTAGTTTTTATCAACCCATAAAAGCAAAGTTAATACAATGTGAGTGATAACTCTTGCAGAGCCCCGTGTTATCTCTGACCCTGTCCCAACATGGATGTACCTCAGTGTGAAGCCAAACGTGACAGAGACAGTATTCCTAAAAGATCGCTGGGATCCGGTATGCGGGGCAGTGTGCCTGCTGTTTCATCGGACGTTGCTATGGAAACTAATATTTCTATGGGGAAGAACGTGGGGCTAGCCAGTGGCACATCATTAATAGTGGGAACTATCATAGGGTCAGGTATATTTATCTCTCCAAAAGGAGTTCTGCAAAACACTGGATCAGTTGGTCTTTGTCTGCTGGTGTGGGCCGGTTCAGGAATTATAGCACTTCTAGGTGGTCTGGTGTATGCTGAGCTAGGTATGGTTGTTAAGAAGTCGGGAGGTGAATATGCTTACATAAGAGAAGCTTTCGGTAACGTGCCCGCCTTCCTGTACGCCTGGACGACAGTGATCGTGACGAGGACGTCCTCAATAGCTATAATTAGTCTGACCTTTGCGGAATACACGGCCTCTTTGTTTGAAAGGTGTGGTCAGCCTGATACACCAAAGAAACTAGTAGCTGCCATTGTCCTAGTAACTATTGCGCTAGTAAACAGCTACAGTGTAAATCTGGCGGCAAGAGTTCAAGTGTTCTTCACCGTGGCAAAAGTTGTCGCCCTGATTGTTATTATCATCGGTGGAATTGTTAAACTGGCTCAAGGCTGGGTATATGAAATAGGAACTGGATTTACAGACACAGCCGATTCTCCTACAGCGATAGCTCTTTCCTTTTACAGCGCCCTCTGGGCCTACGACGGTTGGAACAATCTGAACTATGTTACAGAAGAATTACAAAATCCTAGAAGAAATTTGCCTCTAGCTAATATTGGCGGAGTTCTCTTAGTTATGGCTGCTTATATTTTGACAAATGTTTCCTACCTCACAGTGATGTCCAAACAAGAAATGCTGGATACCACAGCTGTTGCAGTGCTGTGGGCTGACAGAGTTATCGGCGCTGCTGCAATAATTATTCCAATCTCTGTGATGGTGTCAACGTTTGGTGCAGCCAATGGTTCAGCCTTCGCAACAAGCCGAATTGCATTTGTCGCTGCCAGAGACAACAACCTGCCTCAGGTCCTGTCCTTCATACACTACAAACGACGCACACCTCTCCCGTCTATGCTTTTCACTTGTTTCGTGGCTCTTCTGATGATCATACCAGGAAACATTGGCGGTCTCATACAGTTTTTTAGTTTTACTTCTTGGATGTTTTATGGGTTGACGTTTACTTCACTTGTTATACTTAGATACACGAAGAAGGACGTTGAAAGACCGTACAAGGTTCCTCTTGTCATTCCAGTTCTGATGATGTTTGTGTCTCTGTACCTCGTCATCGCTCCAGTCATAAATGAACCACGGATTGAATTCCTATACGCTTTCCTCTTCATTCTAGGAGGTCTTATTTTCTACCTGTTAAACACTGGTCCGGACATTGACCTTGTCAGTAAACAGTACGTCCGAATAGAAAACGTTGACTGGTCAGAACAGCGAACCGCGCTCACCTGTCATCAGTTGTTTGAACTATCCTGCAGCTTTGGGTCATTATTAAAAAAAAGAGGTATTAAACCTGGAAACGTCGTCTGCAACACACTTCCAAATTCACTGGAAATGGTCGTTTGTGATTTTGGTACCCTAGCAGCAGGTGGCGTCATCTTGAACAAGACTGCCTACCTTTCAGATGGCTCTGATCTTTGTTATATGTTAAATACTTCGAAATGTAAAATAATCATAGCGGATCCGAATCAAACTCCAAATGACTGGAATATCCTTAAAATGCAAATTGACGACATTTCCGAAGACGATCGTATTACATCTGAAAAATTACCTTTCCTTGAAAGTGTCATTCTCGCTCCAGTTACAAATGGAAATGATGAATTTATTCTACGACTCCAAGAAGAAGATTCTTATTTATATACCTGTGGTTCACCGTCAGACGCTGGAACCATCTGGATGACGTCTGGTACCACCGGACTTCCCAAACTGATCCTGACTTCTCACAACTCATTACTAATAAATGCTCGCATCTGGGCATCCATAATGAATGAAAAATTCAATTCGATATTATTCAATGATACTGCTATGGGACATGCATCTTCTTTTGCCTTTTCTTTTCTTGCATCCTGCGCAAAAAGGGTTTTGATTGATCGACGCTTCCAACTTCCTTTAGATTTAGAGAAGTTTATCTGGGAAGTGGTCTGCTCAGAGGAATGCACTGCAGCTTTTATGTCTCCTCTTTTGTTCAAAGCAATTTTAAGAAGAACGGATGTTTTAGAAAGAAACAACTATCTTCTAGACGTTATGTGTGTTGCTGGACAACCTGTGCGAAAGGAATGGTCAGATTTAATAGGTAAAATGACACGGTCCGTTTGTCTGGTTTACGGCTTTTCAGAAATGGGGTACTGTACTTCGATACTTTGTCGGACACCGTCAGAGATGTCTGATTACATTGCTGGGTTTCTGTCTGCAGAGGGTATAAAGCTGAAGGTGGTTAAGGATAATTTACAAGAAACTGAAGCAGGAGAACAAGGTAATCTACTGGTTCACTCTAACTGGATGTTCAGAGGCTACACTGGATATGAGGAACAGAACAAGTCAAAGTTTACAGAAGATGGATGGTTCAAAACCGATGATCTGGCTTTCAGGAACAACGAAGGATGTCTGTACGTTGTATGTCGAAAGTCTGACGCTATAGCAAGAGGAGCATGCACTGTATATCCGTCCTATTATGAAACTGTCATAGGCTCGTTACCAACCGTCGCCGAAGTCATCGCTGTCCCCATGCCAGACAAAGACCTTGGCAATGAAATATGCGCTTGCGTCATTTTTAATCACGAATTTATCTATAATGAAAACGAGGTGGCAGAAATATGTGATTCGCTGTTCATAAAAGGGTCTGATATTCCAGAACCACGATATTACATGGTGATGAAAAAGTTCCCAGAATTATCATCGGGAAAGCCCGACAAAAAGCAGCTCATAAAAATGGCAATGGAAAAATTTAATTTGTTGTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00501	AMP-binding	AMP-binding enzyme	Family	Interproscan
PF13520	AA_permease_2	Amino acid permease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000873	Domain	AMP-dependent synthetase/ligase domain	Interproscan
IPR002293	Family	Amino acid/polyamine transporter I	Interproscan
IPR020845	Conserved_site	AMP-binding, conserved site	Interproscan
IPR042099	Homologous_superfamily	ANL, N-terminal domain	Interproscan
IPR045851	Homologous_superfamily	AMP-binding enzyme, C-terminal domain superfamily	Interproscan
IPR050598	Family	Cellular Amino Acid Transporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11785	AMINO ACID TRANSPORTER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003333	Biological Process	amino acid transmembrane transport	Interproscan
GO:0015179	Molecular Function	L-amino acid transmembrane transporter activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf403_4.41 global RNA-seq network