Gene detail

Detailed information of CsqKR_Scaf3_8.19 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf3_8.19	NUCLEAR EXPORT MEDIATOR FACTOR NEMF	chr1	7285127	7291829	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf3_8.19

GTCACCAGTGCTTGGTATGTGTATCATGATCAAGTTTCAAAAACTGCACCAAGTGGAGAGTATTTAACTACTGGCAGTTTCATGGTCAGAGGTATGTAATTAAAATATTTGTAAATACTTCCAGTGGAATAAAATAGTATTTGGAGGTATTGAAAATTCATTTATTGTTATCAAAATACTTATTTAGATGTGAAAACGTTTCCAACTTGTTACTTTAAAATAAAAACTTCAATCATGTCTATGTTTTTTAATTGCAGGAAAGAAAAATTATCTCCCTCCTTCATATTTGATATATGGATTCGCTTACATCTTTAAGCTTGAAGATGGAAGTATTTTTCGACATAAAGGAGAAAGAAAAGTGAGGTCTGTAGAAGATGAAGAAAAGGATACTGTTAAAGAAATTGTTGTTTCTGTGGAGCAGAAAGATGAGTGTGAAGAAAAGAAAGAAAGCGAAAACTGTGATGTTAAAACTGAAAGTGACACTTGTTCATCCAGTGAATGTTTTGTTCATAAAAGCAGTGTTGACTTAAATTCAGACTCACTGAATGAACTAACTGCTGATATAACTGAACAAGAGGACAAAGTGGAAACAGATGATTCAGAAACTTCAGAGAGTGAGAAACATTCAGATGAAGACACGAAGGATGTATTTCCAGATACTTATATCAACTTGATGCATGTTGCAGGAGACAAATTTGAACTGAAAAGGGATGTCAGGACATCAAACACAGATGATGATTTGAATGATGAAGGGAACAGAATCATCTTCCTTGGAGATAATCAGCCTGTAACCATAGGAAAGAAGTGTGTCAACAAAGGAACAAAGTTATCAGCAAGGCAATCAAGAAAAGGTAAAAGAGAACAGAGTTTTAATGATGATGAAGATAATGTGTCATGGTTAAAACAAGAACAAACAGAAAAAAAGGAGGAGGAAAAACAAAAATTGGCATGTACAAAACCAGAAAATGCAGTTCAGCAGCCAAAACGAGGACAAAGGGGGAGAAGGAAAAAAATAAAAGAAAAGTATAGGGACCAGGATGATGAAGAGAGACAATTGCGAATGGAAATACTGGCATCAGCAGGAGCTGAGAAAGAAGTTGTATCTCAAAAGGGCAAAAAAGGCAAAAATAGCAAAAATGTCCAAATCAATAAGCAGCAAGAAAAGAAAGCAACAAAGGATTTTCAGAAACCTGGAGAATCTACAAACAGACAGACAGAATGTCAGGATAAAATAGAAAAAAGCACAGATGTCTCTTTAGAAGGGTCTGCAACACAAGTTGATGAAGAAGATGAAGAAAAAAAAGTATCATCTTCAAAAAATATTAAGAAACCAGCCAACAATGAGGCTCTCGATTCAGATGAAGAAAAGGTGGATGATAATTTACCTTCAACAAATGATACTGACATTCTGGACTCTCTGACTGGTTGTCCATTACCTGAAGATGAGATTCTTTATGCCATCCCAATGTGTGCACCTTACAGCTGTTTGATTAATTACAAATACAAGGTTAAACTTCTGCCAGGAAACACTAAGAGAGGAAAAGCTGCTAAAACTGCGATAAACATGTTTCTACAAGAAAAGAGTGGGTCGTCTAGAGAAAAAGATCTACTGAGAATAATGAAGGATGTTGATGTTTCAAGAAATATTCCAGGCAAGGTGAAACTGGCAGCTCCAAATCTTCATAAAACAAAAAAATAATTTTACAGCATTTTCTGTAAATGACTAAAATAAATGATTGTTATGGTTTTGGGAAAATACATTATGTACACAAAATACAATCAACATGAAATAACAAACTGGTGCAAAATTGTTTCATTATCACACAATAGTCTGAATGGCTGATGCATATTTGATTACTTATTATTTAAAAATAAAGAAAATAAAAGCATTTTGTTTATTGTACTCTCTCATTCAGTCAGTACTCAAGACATTTAGCCAGTAACATGGCTCAGAGTTTTTGAATTCAGTAAATGAAATACTACAGACACACCTTTCTTCGTTACACATCTTGATAAAGCCATTTAATATCAATGACTATTTTTATTAAGAAAAATTATCCTAGATTGGAAAAAAAAAAAATAAAATAAAAAAAAAGATTAATTTGGATTTAAAATATCTGAATGATATCATATTACTTTGAAACTAGAAAAGAGCAAGGTTTTTTTTTTTTTTTTTTTTAATTATTTTTTTTGACAAGTTGTGCTTTTAAAATTTAAAAAGATAATTACTAACTGAACATAAACTCTGTTTC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11923	NFACT-C	NFACT protein C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021846	Domain	NFACT protein, C-terminal	Interproscan
IPR051608	Family	Ribosome Quality Control Complex Subunit NEMF	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15239	NUCLEAR EXPORT MEDIATOR FACTOR NEMF	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000049	Molecular Function	tRNA binding	Interproscan
GO:0043023	Molecular Function	ribosomal large subunit binding	Interproscan
GO:0072344	Biological Process	rescue of stalled ribosome	Interproscan
GO:1990112	Cellular Component	RQC complex	Interproscan
GO:1990116	Biological Process	ribosome-associated ubiquitin-dependent protein catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf3_8.19 global RNA-seq network