Gene detail

Detailed information of CsqKR_Scaf3_71.6 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf3_71.6	PLASMINOGEN-RELATED	chr1	13565309	13568585	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf3_71.6

AAATAAAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAATAAAAAAAGAAAGAAGGAAAGAAAGAAAAAAAATGTTATAATACCTTTCATTAAAATTTTCAGTCGCGACCCGACAGAGACAAGTATGTAAAGATTCTGGAGAAGAATGTTTCGCCAAAATACTTACTTGACTTCAAGGTGGCAAGCAGAGACATTGTAACGTCACGGGGTTATCCTTACGACTACAACAGCGTCATGCACTACAACAAATGGGCGTTCACAAAGGCTGGAGACCCTACTATAAAGGTGATAGGTATAGGCAAGAAGTTAGGACTCGGAATTGGACAGCGTTTAGGACTGAGTACGATAGACATGGCTCAGCTGAGAGAGATGTATCGCTGTAACGAGAAAGAAGACAGCAGAAAGACATCATGTCCTAAAGGTTGGAAAAAACGTAAGACAACCTGTTACAAATTCCACACAACTCAGCCACTTCAGTTCTCGGCCGCACATAAAAAGTGTGAGCAACAGAATGGCCATCTTTTGGCCATCGACAACAAAAGTGAAGAAAGGTTTATTCAGAAATACATCAAACGGAAGTACAGAAAGATCCGAAAATGGCGTCTAGGCGCGAAGCTAATTAATGGAACCATGAAGTGGTATAAAGGCAATCGCCTTAAACCGAAAAAAATCAAGTACACTAACTGGGACGTAGGGATGCCAGGGTCGTTTACGACTTCCGTGATTGCTGTCAGTTTTGATGGGAAAGGTTTCAAGTGGCAAGGAGTCTGGGCCGGATCGCTGAATCAGTTCCCAGCGCATGCGTACCCGTTCATATGTGAAAAACGTGCAAGACGAAAATGTCTCAAAGGAATACATAAAGACGGACGTGACTACAGAGGAAAGCTGGACCATACCATGGACGGTTACACATGTCAGAAATGGACAGAACAGTATCCTCAACAGCATAAATTAAAACCCAAGGACAAGAACGATTCGGACGGACTCGGAAACCACAATTATTGTCGGAATCCAAGCGGAGATCGTCGAAAGCATCCATGGTGTTACACAACGAAGAGGCGTAAAAGATGGCAATACTGTGACGTGGAAGCTTGTCCGAAAACTGGTAGTGAAGTGCGAAAGAGGAATAAGAAACCAAACACACGAATCAGACACACGATACAAAAACGAAATAAAATAGCGAAATCTCGTCCGACAGTTAAGGTACAAAAGAAAAACAAAAAAGCCAAGAAAACATCTTTTGTCAGCAGAAATGACAGAAGCAAATTTTCGACATCGAAAGGAAAAACAAAAGGATTGTCGAAAAGAAAAAAAATTATTTCTAAAAAACCCAAAGTGATTTCAACAACCGATAATAAACATGGATTAAAAACAACGGTAGTTAAAAAATCAAAAACAGCTCAGTATGAAAATATAATGTCTACACCAAAAAGGAATGCAAAACCTAAATCTACAAAGAATATAGAACCTAAATTAAGCAGGGCAACAAAATATATATCAAGAAGAAATATGGAGCATAAACCTTCGAAAAACAGAGATCCTGATTTAACGAAAAACACAAAACCTAATTCAGAAAGGAATATAAGACGTAAATCAAGAAGGAATGTAGAACCTAAATTAAGAAGAAATATGATATCGAATTGAGAAGGGTATGTAAAATCCAAATCAAGAAGAAATACAGAACCTGAATCAACAAGGAATATAAAACCTAATTCAAGAAAGAACGTACAACTTAAATCAAGATTATATTCAAAAACAAGCGACATAATTTAAAAGTAGGAATTTGAAAAAAATACGATTGAGACGTTCTAAACCAAAGAATTCGAAAATGAATGCAAGAAAAAAAATCTTGACCTAGCATAAGACGTCTAGGAATACACTCAAATTATTCGAAAAGAATTCATTTAAAAAAAAAAAAAAGTGTTGTTCTAAAACATTTACCAGCATTAAATACAGAATATACGAAATTAATAAAAATAAAGGATTCGAGAACTAAAAACCAGGAAAAAATACACTATAAAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00051	Kringle	Kringle domain	Domain	Interproscan
PF00059	Lectin_C	Lectin C-type domain	Domain	Interproscan
PF01400	Astacin	Astacin (Peptidase family M12A)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000001	Domain	Kringle	Interproscan
IPR001304	Domain	C-type lectin-like	Interproscan
IPR001506	Domain	Peptidase M12A	Interproscan
IPR013806	Homologous_superfamily	Kringle-like fold	Interproscan
IPR016186	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR016187	Homologous_superfamily	C-type lectin fold	Interproscan
IPR024079	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR038178	Homologous_superfamily	Kringle superfamily	Interproscan
IPR050759	Family	Serine proteases and regulators with kringle domains	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24261	PLASMINOGEN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004175	Molecular Function	endopeptidase activity	Interproscan
GO:0004222	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0005102	Molecular Function	signaling receptor binding	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008237	Molecular Function	metallopeptidase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf3_71.6 global RNA-seq network