Gene detail

Detailed information of CsqKR_Scaf3_49.9 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf3_49.9	ZINC FINGER PROTEIN 294	chr1	11368907	11376405	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf3_49.9

AAATATGTCACTTATTTTCCTTTGCATGTTTTAAGATATAATTACATTATATTATTTGTACAAACTTTAATTTACAAATTTGTTTTCAGTGATCTCTCCAAAGCATCAGTCTCAAAGTTGTCACTCAATACTGAAGTTATGAGATTTGTGAAACTGATTTTATCACAAGTAGCTAAAAACCTCTCATCAAATGAATGGGACTTTATCATGTGCAGCACTGTGGCTTGGATGCAGAGTGTTAATGAAACTGAATCTCACCTTTTGTCATCTGTACCTATAATGTCATTTGCCGTGAGTGCTTGTGACCTTTTGGCCACAGTGGTCAATTGTCTTCATGGTCAGGTTCAGAAAAATCCTTCAGCCTTTCCTGAGAATCTTCTCACAGAGTGGCAGGAGTTTTTCAGTGGAGGAGCCTACAGTGCACTCCTACCCCTGTACATCAAACTGGCAGGATCATACAAACAAACAGCAGCTAGTGGTCTGGAATCTGTGTGGTTGTGTTTTGTTGGACTGGCAATATCTCACTGTCCTAAGGAGCAGATTCTGGTTCACCAGCTCCCAGCCTATTTCATTGCTGGAGAATCATCTCCTTTGCCTGACACTCTTCAGACACTGATTAATCATTTTGGACCAATGTTGTTGTTTGCTGATAAATCTGTTCAAGTGACTTCTTTCTGGATACTTAATAGAATAATGTCTGAGCTTCCTCAGTATGAACAGGAATACAAAGATGAATTTGAACCAGAAACAAAAGAGGAAGTATCCAGGTGTCCGCCTGCATGTATTATGAAAGTTATTGAAGATGGGGACACAGCACTTGACATTATTTTGGCTGATGCGGCTGTACACGACTGTGTTCTGTTGGAACCTAAGACAGATGAGTTCAGATACACACTGGGGTACTTGCTAGCATGGAGACTGTTACTGACATTTTTCAAGAGCTCAACACCAGAGTTAAGAGCTCAGTATGCAATATACTTCAAGAAAACACAACTGGTTAATCATCTTCTTAAACACCTGTTCAGATTAATACCTGACAAGCCACCAAGTGTGTACTTCGAATCAACTAAAGTTTTAGTGTCATCAGATCCACCTTCAAAGAACGACATTCAGAGATTAGTGTGTTTAGTTTACCGACAGAGTCTAGAAACAATACCAGCTCTCGTTCGACAGTGGTGGAAAGACCAAGATAGAAAAACATCTTTGTATATTGACAAATTCACAAAGAATCACGTAAGCCCATTGCTGAGTTTTTCTGAAATTTCTTCTGTACAAGCATCAGACAACAATTTGGATGGAATTACTATCAAAGGTAGACCTTCGACACGTGAGGTTGTTGCTAAGTATGTTATGTCTGAAGTCACTATTGAAGTGGTGATCTCTCTACCAGAAAACTACCCACTGGGAACTATATCTGTTGTCAGTAACAAGAGGGTTGGGGTGTCACAAGCTCAGTGGGACAAATGGCTTCTACATCTCAACATATTCCTGCAACATCAGAATGGGACAATTTTAGAAGGTGTAAAGCTCTGGAAGAGAAACATTGACAAGAGATTTGAGGGAGTCGATGACTGCATGATCTGTTATTCAGTTCTCCATGGCACCAACTTTCAGCTGCCAAAACTCATGTGCAAAACTTGCAAGAAAAAGTTTCATTCCACTTGTCTGTACAAATGGTTCAGCACCAGTCACAATTCAACATGTCCATTGTGTCGAAATTTGTTTTAAAACAGGAGTGGAACTCCCAGGAATAGAAAGACACAAAAACAGAACTGTTTTAAACTAGTCTATCATTTTACACAGAGACCACTTCTGTGAATCTGCTGTAAGCAGTCTATAAAAACCAATAACATAGCTAAAAGGATGCTGCATATACAGATCTTCTTTAACATTAGAAAGATTTTTTTTATTTTTTATCATGAACTGATAGTGTGTGCATGTGTGTGTGTATATCTATATATGTATGCAGGTATATATATATACTAATGACATTTATCAGATTTCTTGTCTATCCTGTATTTCATATTGAAATGTGGGTAATAGTTCTTGCTGGGATATGGCTCATAAAATATGGAAATTCCTTCAAATA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13639	zf-RING_2	Ring finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR011016	Domain	Zinc finger, RING-CH-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR039795	Family	E3 ubiquitin-protein ligase listerin	Interproscan
IPR039804	Domain	Listerin, zinc finger, RING-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12389	ZINC FINGER PROTEIN 294	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0043023	Molecular Function	ribosomal large subunit binding	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0072344	Biological Process	rescue of stalled ribosome	Interproscan
GO:1990112	Cellular Component	RQC complex	Interproscan
GO:1990116	Biological Process	ribosome-associated ubiquitin-dependent protein catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf3_49.9 global RNA-seq network