Detailed information of CsqKR_Scaf3_24.42 in Chrysomallon squamiferum Gene info
Gene IDAnnotationChromosomeStartEndStrand
CsqKR_Scaf3_24.42DNA-DIRECTED RNA POLYMERASEchr189243878927335+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01000RNA_pol_A_bacRNA polymerase Rpb3/RpoA insert domainDomainInterproscan
PF01193RNA_pol_LRNA polymerase Rpb3/Rpb11 dimerisation domainDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001514Conserved_siteDNA-directed RNA polymerase, 30-40kDa subunit, conserved siteInterproscan
IPR011262DomainDNA-directed RNA polymerase, insert domainInterproscan
IPR011263DomainDNA-directed RNA polymerase, RpoA/D/Rpb3-typeInterproscan
IPR033901FamilyDNA-directed RNA polymerases I and III subunit AC40Interproscan
IPR036603Homologous_superfamilyRNA polymerase, RBP11-like subunitInterproscan
IPR036643Homologous_superfamilyDNA-directed RNA polymerase, insert domain superfamilyInterproscan
IPR050518FamilyArchaeal Rpo3/Eukaryotic RPB3 RNA Polymerase SubunitInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR11800DNA-DIRECTED RNA POLYMERASEInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0001054Molecular FunctionRNA polymerase I activityInterproscan
GO:0001056Molecular FunctionRNA polymerase III activityInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003899Molecular FunctionDNA-directed 5'-3' RNA polymerase activityInterproscan
GO:0005666Cellular ComponentRNA polymerase III complexInterproscan
GO:0005736Cellular ComponentRNA polymerase I complexInterproscan
GO:0006351Biological ProcessDNA-templated transcriptionInterproscan
GO:0046983Molecular Functionprotein dimerization activityInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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Expression pattern
 1. Expression trend for CsqKR_Scaf3_24.42 global RNA-seq network
TOP