Gene detail

Detailed information of CsqKR_Scaf39_42.7 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf39_42.7	COMPLEMENT COMPONENT 1, S SUBCOMPONENT-RELATED	chr15	10953101	10967964	+

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf39_42.7

ATGCGGCACTGGGAGAACTACACGTGTGTCACGTTTATTGAGAAGACGGACGAAGACACGGACTACATCAAGTTCACAGAACGACATTGTGGGTGTTGTTCGTTCGTCGGAAAACGTGGGAACGGTCCGCAGGCTATTTCTATAGGAAAGAACTGCGACAAGTTTGGAATCGTAGTTCACGAACTAGGTCACGTGATTGGATTTTGGCACGAGCATACGAGACCAGATAGAGACGAACACGTGCAGATTATTTACAAAAATATAATGCCAGGGCAGGAATACAACTTCAATAAATTAACGGCGAATGAGGTTAATTCACTAGGAGAAGAATACGACTATGGCAGCATTATGCACTACGCCCGCAATACGTTTGCAAGAAACACCTACCTCGACACCATTTTGCCTCGGAGGAAATCGGGCGTTCTCGTCAGACCCGAAATAGGACAAAGAGTTCGGCTAAGTCCGGGAGATATACGACAAGCCAACAAATTATACTCTTGTCCAAAATGTGGACGAACTCTGCAGGAATCCAATGACGTGTTTTCACACAAACCTACAGAGAATCAACAGAGCACGTGTCAGTGGAGAATCTCCGCGACCCACGGGGAGAAAATAGTTCTGAACATCACCCAGATTGATATACCAGAGTCCACCAACTGCGCGTCTGACTACCTCGAGGTCCGGGACGGATATTACATCAAGTCGCCGCTCCTGGGTAGATTCTGTGGATCAGAACTTCCAGACACCCTGATATCCAGCGATACCCGGATGTGGATAGAATTTAAAAGTCTAAAAGGACTAGGGAATGGATTTACGGCAGAATATGAAGCTATCTGTGGTGGTGAAATCTTCAAGGACCAAGGTGAAGGACATTTGACCAGTCCAAACTACCCGGATGATTATCGCCCGAGCAAAGAGTGTGTGTGGAAGATAACTGTTCCAGAAAAGTTTTCAGTGGCGCTCAAGTTTCAGTCGTTCGAGATTGAAAACCACGACGACTGCGTGTACGACTACCTGGAAGTACGAGACGGACACGAAGAGACGTCACTTCTGATTGGGAAATACTGCGGCTACAGGATCCCAGAAGACATCAAATCGACGGGAAACAAACTTTACGTCAAGTTTGTCTCTGACGGGTCTGTTCAGAAGGCTGGTTTTGCAGCCACGTTTGTGAAAGAATACGACGAATGTATGACAGACATTCATGGCTGTGATCACGAATGTGTAAACACATTAGGAAGTTTTAAATGCAAATGTCGTATTGGATATGAACTTCATTCTGACGGCAAAAGATGCGAAGACGCTTGTGGCGGTTACATTGAAGAAGAATCTGGCTCAATTCAGAGTCCCTCGTTTCCAGAGCTGTACCCACCAAACAAGAACTGTGTGTGGCAGATTGTAGCCCCAGAACAGTACAGAATCACACTCAACTTCACTCACTTTGACATGGAAGGAAACAACAGAGACTGTGAGTACGACTCTGTGAGGATAAGCAGTGGAACTGGTTCTGACGCCAAACTTCATGGTTTGTTCTGTGGTTCCACTCTTCCTATGCCAGTGACGTCTTTAGGCAGCACCCTCAGAATCGAGTTCAATTCAGACAACTCCGTCCAGAAAACGGGCTTTAAAGGCAATTTTAACACAGACAAAGACGAATGTGCTATTGATAACGGCGGGTGTCAACACATTTGTAAGAACACCCTGGGATCCTACAAGTGCGCATGTCACAACGGTTTTACTCTTCACGAGAACGAACATGACTGCAAAGAAGGTGGCTGTCAACATGAAATATCAGATCCGTACGGAGAACTGAGCAGTCCAAACTGGCCAAACTTCTACCCAAGTCGCAAGGACTGCGTCTGGCATTTCACGACGAAAGAAGGACACCGCATCAAGCTCGCCTTCCACGACTTCGAGCTTGAACCTCACCAGGAATGCACCTACGACCACATCATCGTCTTCGACGGTGATGATTCGAACGCTAGAAGTCTGGGTCGTTTCTGCGGCAGCAAGAAACCAATGCCCATCACGTCTAGTGGAAACAGGATGTACATGGTGTTCTACTCAGACGCGTCCGTACAAAGAAAGGGTTTCCATGCAGAACATGAATCAGTTTGTGGAGCGACTCTGATAGCGTCCCACGCGGCACAGAAGTTTTTTTCACATGCTAAATACGGCGACCACAACTACGACAACAGAGTGGACTGTCAATGGAGGATCCAGGCGAAGAGTGGATTCAGAATCCGACTGAGATTCCAAGCATTCCAGGTTGAAGACGAGACTGACTGCGGATACGATTCAGTTCAAGTTTTTGATGGCTATGATGATTCAAGTCTTCAAATAGGCAAATACTGTGGAAGTCTTATTCCCGAAGACATTATTTCATCAGGAAGTGATCTTCTGATACGCTTCAAATCTGACGATACACTGAACACCAAAGGATTCTACGCGTCATATGTAATGGCTGACCCAGAAACAGACGACTTCGATTCTGGCAAAGAAATAGACTTGGAAACAGAATTCGATTAA

Transcript

CsqKR_Scaf39_42.7

GTGCTAACAAAGGTTTGTTCAAGCTGGCCATGCGGCACTGGGAGAACTACACGTGTGTCACGTTTATTGAGAAGACGGACGAAGACACGGACTACATCAAGTTCACAGAACGACATTGTGGGTGTTGTTCGTTCGTCGGAAAACGTGGGAACGGTCCGCAGGCTATTTCTATAGGAAAGAACTGCGACAAGTTTGGAATCGTAGTTCACGAACTAGGTCACGTGATTGGATTTTGGCACGAGCATACGAGACCAGATAGAGACGAACACGTGCAGATTATTTACAAAAATATAATGCCAGGGCAGGAATACAACTTCAATAAATTAACGGCGAATGAGGTTAATTCACTAGGAGAAGAATACGACTATGGCAGCATTATGCACTACGCCCGCAATACGTTTGCAAGAAACACCTACCTCGACACCATTTTGCCTCGGAGGAAATCGGGCGTTCTCGTCAGACCCGAAATAGGACAAAGAGTTCGGCTAAGTCCGGGAGATATACGACAAGCCAACAAATTATACTCTTGTCCAAAATGTGGACGAACTCTGCAGGAATCCAATGACGTGTTTTCACACAAACCTACAGAGAATCAACAGAGCACGTGTCAGTGGAGAATCTCCGCGACCCACGGGGAGAAAATAGTTCTGAACATCACCCAGATTGATATACCAGAGTCCACCAACTGCGCGTCTGACTACCTCGAGGTCCGGGACGGATATTACATCAAGTCGCCGCTCCTGGGTAGATTCTGTGGATCAGAACTTCCAGACACCCTGATATCCAGCGATACCCGGATGTGGATAGAATTTAAAAGTCTAAAAGGACTAGGGAATGGATTTACGGCAGAATATGAAGCTATCTGTGGTGGTGAAATCTTCAAGGACCAAGGTGAAGGACATTTGACCAGTCCAAACTACCCGGATGATTATCGCCCGAGCAAAGAGTGTGTGTGGAAGATAACTGTTCCAGAAAAGTTTTCAGTGGCGCTCAAGTTTCAGTCGTTCGAGATTGAAAACCACGACGACTGCGTGTACGACTACCTGGAAGTACGAGACGGACACGAAGAGACGTCACTTCTGATTGGGAAATACTGCGGCTACAGGATCCCAGAAGACATCAAATCGACGGGAAACAAACTTTACGTCAAGTTTGTCTCTGACGGGTCTGTTCAGAAGGCTGGTTTTGCAGCCACGTTTGTGAAAGAATACGACGAATGTATGACAGACATTCATGGCTGTGATCACGAATGTGTAAACACATTAGGAAGTTTTAAATGCAAATGTCGTATTGGATATGAACTTCATTCTGACGGCAAAAGATGCGAAGACGCTTGTGGCGGTTACATTGAAGAAGAATCTGGCTCAATTCAGAGTCCCTCGTTTCCAGAGCTGTACCCACCAAACAAGAACTGTGTGTGGCAGATTGTAGCCCCAGAACAGTACAGAATCACACTCAACTTCACTCACTTTGACATGGAAGGAAACAACAGAGACTGTGAGTACGACTCTGTGAGGATAAGCAGTGGAACTGGTTCTGACGCCAAACTTCATGGTTTGTTCTGTGGTTCCACTCTTCCTATGCCAGTGACGTCTTTAGGCAGCACCCTCAGAATCGAGTTCAATTCAGACAACTCCGTCCAGAAAACGGGCTTTAAAGGCAATTTTAACACAGACAAAGACGAATGTGCTATTGATAACGGCGGGTGTCAACACATTTGTAAGAACACCCTGGGATCCTACAAGTGCGCATGTCACAACGGTTTTACTCTTCACGAGAACGAACATGACTGCAAAGAAGGTGGCTGTCAACATGAAATATCAGATCCGTACGGAGAACTGAGCAGTCCAAACTGGCCAAACTTCTACCCAAGTCGCAAGGACTGCGTCTGGCATTTCACGACGAAAGAAGGACACCGCATCAAGCTCGCCTTCCACGACTTCGAGCTTGAACCTCACCAGGAATGCACCTACGACCACATCATCGTCTTCGACGGTGATGATTCGAACGCTAGAAGTCTGGGTCGTTTCTGCGGCAGCAAGAAACCAATGCCCATCACGTCTAGTGGAAACAGGATGTACATGGTGTTCTACTCAGACGCGTCCGTACAAAGAAAGGGTTTCCATGCAGAACATGAATCAGTTTGTGGAGCGACTCTGATAGCGTCCCACGCGGCACAGAAGTTTTTTTCACATGCTAAATACGGCGACCACAACTACGACAACAGAGTGGACTGTCAATGGAGGATCCAGGCGAAGAGTGGATTCAGAATCCGACTGAGATTCCAAGCATTCCAGGTTGAAGACGAGACTGACTGCGGATACGATTCAGTTCAAGTTTTTGATGGCTATGATGATTCAAGTCTTCAAATAGGCAAATACTGTGGAAGTCTTATTCCCGAAGACATTATTTCATCAGGAAGTGATCTTCTGATACGCTTCAAATCTGACGATACACTGAACACCAAAGGATTCTACGCGTCATATGTAATGGCTGACCCAGAAACAGACGACTTCGATTCTGGCAAAGAAATAGACTTGGAAACAGAATTCGATTAATGGGACAGAAGAAGGTGTTTTTAGTGACTGCAATACAAGAACCAGACTCTGAAGCTCATGCTGCCTACTGGTGGCTTTATAAATAATAATAAATAAAAAACAAAACTCGAAATCACTGCCATTGTCGGGTTATAAAGGTGGTAACGATATAGTACTCAAAAACTGATAACGCAATGGCGATAGCAGTTAATGTTTTATTAGTATTTAGAAATTAAGAGTTTCCATCAAGGTTCGTTCCCTTGGTGACGTGTGAAAGAAAAAGGGGAGGTAATAACAGTAGAATGACGGGATCAAGTATAAATGTACAGTATTTATGCATGTTATTTTTTTTTTTTTTGAAAACATCTTTTTGTATATGTGTGAAATGTAGAATGTAAGAATTGTTTAGTTATCTGTGTGTGAGATAGGTTTTATAAATACTGGTGGGTTCTGGGGATTTTTTTTTTTTTTTTTTTCAGAATTAAATCAAATAAATTATAATCTCACTGAATCAGAGAAATTATAATTGCTCTATCTTAAAGTGATAAGAAAATTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00431	CUB	CUB domain	Domain	Interproscan
PF01400	Astacin	Astacin (Peptidase family M12A)	Domain	Interproscan
PF07645	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF14670	FXa_inhibition	Coagulation Factor Xa inhibitory site	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR000859	Domain	CUB domain	Interproscan
IPR001506	Domain	Peptidase M12A	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR006026	Domain	Peptidase, metallopeptidase	Interproscan
IPR015446	Family	Bone morphogenetic protein 1/tolloid-like protein	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR024079	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR035914	Homologous_superfamily	Spermadhesin, CUB domain superfamily	Interproscan
IPR049883	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24255	COMPLEMENT COMPONENT 1, S SUBCOMPONENT-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004222	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0004252	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008237	Molecular Function	metallopeptidase activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf39_42.7 global RNA-seq network