Gene detail

Detailed information of CsqKR_Scaf39_31.17 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf39_31.17	UNCHARACTERIZED	chr15	9822794	9830007	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf39_31.17

CACAAATTTAGTATGGCGACTCGTGGTGTTGACAGGGTTGTAGCAAAATGCCAAGCTTGTATAGACGCCGGAAATTTTTATGAAGCACATCAAATGTACAGAACACTTTATTTTAGATACAATGGACAACAAAAGTATGCAGAAGCCTTGGATTTGTTGTACAGAGGTGCCCTTGTTTTGCTGGAACACAATCAGTTAACAAGTGGTGCAGATCTAGCCATGTTGCTTGTGGAATGCATGAACAATTCCAGACAACCCATAACTCAGGATAATATAGGTAAAGTGGTTTCATTGTTTCGACAAATGGATCCAGATTGTCCAGAAAGACATCAGTATTTGGCCTCAGCCATCAAATGGACGACCAAGATTGATTCTAGTCACAAACGGGGACATCCTGATTTACACCAGCAATTTGGAACTCTGTTCTGGCAAGAAAAGAATTATGTGCAGGCAAGGTATCATCTGATTCACTCACAGGATGGGAAGTTATGTGCATCAATGTTGATTGAGTATCATATAACAAAAGGATATCCATCCGAAGTGGATCTCTTTATAGCCCAGGCTGTACTTCAGTATTTGTGCCTTCAAAATAAAGCGACAGCATCAGCTGCGTTCACTGCATACACCCAGAACCATCCGGCCATTCAAAATGGGCCTCCTTTTGTCAAACCGTTGCTGAATTTTGTCTGGTTTCTGTTAATAGCTTTAGAAAGTGGAAAACTAGCTGTATTTACAATACTATGTGAAAAATATCAAACTTCCTTGAACAGAGATCCTAGCTATAAAGAATATTTGGATAAAATTGGTCAGTTATGGTTTGGTCTGCCACCTCCTCAGAGTAGTCAGCAAGGATTTTTTGGCAATTTGATAAACAGCTTGCTACAAGGCAGTGAAGAAAGCACCAGTGACGATGATTCTTCAGCCTGTTTACCTGTGACACCAAACAGAACTGAAACACAGTTTGACATGGATTAGAACTCACCAATCAAAAGAAGCGACTACAACTGTATCTATATTTTGTGGATCTGAAATTCGGTGGTTAATTAATTTGGAGATTATTATTATTTTATTATTATTATTATTAATAATAATAATTATCCGTGTAATATAAAAATGTAATTTAAAAGAGTTGAAATAGTTACTGGAGAGGGAATGTGAATAGAATTCAGACCATAGCACTTTCTTTCATGGCTTAAAGAATTGTCAGAACATTTCAGATTTTCTAATAGTTAGTCTTCCATTCACTTTTTAGCTTTCTTTTTAATCTTAAAATCTTCACTGCATAATGTGGCCAGTTATCTACCAGTTGACCTTCAGGATCTTCTGTCATTACATGAGTAAAGTTGTCAGTTCATTCATCTAACTTCTAGAGAGCATCACCTAGTTTAGCTACATCAGTTTATCCAGTTTATCAGAAAAAAAAAACAGAACAAGACCTTAAAAATATAGGTATTTTCTAAATCCATCATGGTAACTACTTTCTAGAAAACACATTATTCTACCAGTGTAGTAACACGATTTAAAGATTTCATATTGTTTGAACAAAGTGAATGGTTGCTAACTAAGCCATGATAATAATTTTCCACGATAATAAAGCTAGCTGCTTACTTCAGTAGCCTCAAATATATCTTTCTCCAATAGCTACATGCAAAAAGAAAAAAGAAAAAGAAAAAAAGATGTGCAAATTTGAGTCAAAATACTCAGTAAAACTATTATGTGTAAAAATCTGCTGGGTTTTCTCAAAATTTGTACAGAAACAAACACTGACCAAAAATAATTTGTTTTTCTTGATTTGTGGTGGTAGATTAATTCAGCACTTGAGATTTAAATTAATCTAAATATATGCATTGTTATTTCATTCTTCATGGACATTGTGTAATTTATTACCTTTTTTTTTTAACAGGTTTGTTACATGCATAGACTTTAATGATATTTTGGTGTAATGCAAAAAATATAATTACTCGCATTGTGTGTGTGTGTGTTTGTGTGTGTCTTACCTGCTGTTTCAAGTTTTACTAGTACAAAATCTTATTGATATTTATAAATTAATAACACATATTTTTTTATAAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04190	GET4	Golgi to ER traffic protein 4	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007317	Family	Golgi to ER traffic protein 4	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12875	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0045048	Biological Process	protein insertion into ER membrane	Interproscan
GO:0071818	Cellular Component	BAT3 complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf39_31.17 global RNA-seq network