Gene detail

Detailed information of CsqKR_Scaf39_1.20 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf39_1.20	METHIONINE-R-SULFOXIDE REDUCTASE B1	chr15	6849086	6853608	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf39_1.20

CGCCATATTGTTTACTTTAGTAACCGTATGTCAAATACCGCACATTAGTATTTTATTTTGATAATGTTCAGCATATTTGATTTTAATTGAATATTGCATTATTTTTAATATATTTCCTATCGATAATCTTTAAACAACGAATAATAAATTATTACGATCGACATCGCAAGTTTCGTAAACAAGTGCCCGTTTCAATTAGACTGCTTTGATTCAGTGAAATGTATTTTGAAAAACGTTTAAATCTGTGGTTATAAAGGTAAAATAAAAATGTCATTCTGTAGCTGGTTTTCCGGTGAAAAATATCGAAATCATTTCGAAAAAGGTTTATATGTGTGTTCTCAATGTGGAAATGAACTTTTTCACAGCAGTTCAAAATTCAGACATCAGTCTCCATGGCCAGCATTCAGTAATTTAGTCCATCCTGATAGCATCATCAGAAGACCTGAATCTTCAGCTGTTTTCAAGATACTTTGTAGTCAGTGTGGGGCTGGACTTGGTCACGAGTTTTTGGGTGAAGGGCCAGACAAAGGTTCATCACGGTTCTGAGTGTTTAGTGAAACATTAAAATTTATTCCTCATGACAAGTGAAAATCAAGAGACTAACATACCCATTTGCCCAGGATAGCCATTAGAAGTTACCAGACACAGAGACAAGAAATCTGAACAGTTACAGTGGTTCAGGAGAGCAGTTTATACAGTAAACCACATTTGATTACTAAAGTCCACAGTTCATATCACAGGACAAAACCAGTTTTCATATTTTTAAAGGAATTTAGAATATTGCTCTAAATGTTTGCTGAACGTTGTATTTAAGTATATTTACATATATTTTGTAATGTCAAATATAAATTTCTAATATTGTGAAAAATAAGGATTGTTTGTAATGTCCAACATATTGAATTTAGAGATTTAAGTTGGGTGTGAACAATCCCCATTGTAAGAACAAATGCTGGGGTTTTTTTCTTTTTATTATTTTCTTAGTAAAGCAGTGGAAGTTATTACATGCATTTATTTTATTTTTTTGTTTACTTTTTGTAACTGTTTTTTATTTTTATTTTAATTAAATATTATTTTTTAATTTTATTTATATATATATATATATTTTTTTTTCTCTCTCTCTCTCTTCTGGGCAAGTGATGAGTTTCTCAGTATAAATTTACTCTTTCAGTCAAGTTTGTTGAAGATATATGAAGCTATCAAATTCAAGCCTTTGTGGAACATTTGGTGGTGGATGAAACTCTAACAAGGTTGACTGCAAAGATGAAATTTTAACTAAGAAGCTAAGAATAAATTAGTTACACTTACTATTTAACAACAGTATTGTGTGTGTGTCTACATATCAACACTTTTCACACTTCACCAGTTACAAACACACTAACAAGTTTGTTGAGTGATTATTTTATACCATTTATACATTTTTAGGACTTTCAAAAATGCTTTTATATTTTCTGTTGCTAGTATTCTTTTTCTATTTTTTTTATAAAAATGCATTTATGTATAAATGTAATGTATTGGAATTTTTAAAATTACACTTTACATGACAGTATTCAAAATTTGTTTTGTTATATAAATAATTTGTTTATTTTTTCAGTCACATAATAACATGCAAAAATGCAAAATTTATTAAAATCACATCAGTTTTAGTTGTTATACTTCTACAGATGAAAGAATTGTATTTGTGCCTTTCAGAATCATTTCTTGTTACAGAGTGTTATGAATTATCATGTATAATTACATGCACTGTTATTAAATAATTTAAAAGTGTAACAGTTTATTTTTTAACTTAATATTGCTTTCTCTTGCTAGAAAGTGAAAGTACTCTATGCAAAAGTGTTAAATCAAGTTCTTGTTGTATATATTTATTCATAATTCTGGCTTTAACTAAATTTAAAAAATTTCAGTTCTGTTTAAGATATGTTATTAAGCAACATGTAAAAGTGATTGTCAAATATTTGTTATGTAATTTAAATCAAAACTGAGATTGCCAAAAAAGTAAATGACATTTTTCAATTGTGTTTGAACTTTAAAATACAAACATTTTTGTGATATTAGTGTTTTAGATTTGCTTTATTGAATTTTTTATGTTAGTGTGGGATATGGAAATGTGAAATGGTTATTTGTAAGACAAAGACTAATAATAAATTATTTTGACATTTTA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01641	SelR	SelR domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002579	Domain	Peptide methionine sulphoxide reductase MrsB domain	Interproscan
IPR011057	Homologous_superfamily	Mss4-like superfamily	Interproscan
IPR052150	Family	Methionine-R-sulfoxide reductase B1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46755	METHIONINE-R-SULFOXIDE REDUCTASE B1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0030091	Biological Process	protein repair	Interproscan
GO:0033743	Molecular Function	peptide-methionine (R)-S-oxide reductase activity	Interproscan
GO:0070191	Molecular Function	obsolete methionine-R-sulfoxide reductase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf39_1.20 global RNA-seq network