Gene detail

Detailed information of CsqKR_Scaf398_4.15 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf398_4.15	AP-5 COMPLEX SUBUNIT BETA-1	chr5	12119776	12138762	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf398_4.15

GAGAACGCAGGCAGAAAGATGTCAACATCGGGCAGTCGTCTGCATTTTACTGATTGTAAACAAAGTTTAAAGTACATACGAACCAGCATTGCAGATGGCACCATAGAAAAAGAGTTTGAAAATGAAGATTTTGTTTTCGATTTGCTTAAATTAATGTATGAAGATGGGGTTGATATTGCTGCAAAAACAGCATATCTTTCTACCTTGGAGCAATTTGGTTCTGAGTCACTGGATGCAAACAGTGTTGATCAAGCCATTTCTACTCTTCTGAATCTTTTCCATCAATACAAGACTCAAGATGAATATGTCAACTTCTGTTTTCAGCTGCTTATAACTGTCACCACCTTGCTCATTAACAGTGCAGAAAATTCTGAAGAATTATCTATGTCAGTGGCTGACAGAATGTGGGATTTTGCTGCTGCTGTTAAATGATGTGCAAACTCGCCGTCTGCGAGGATGTGTTTGTAGATGTCTCCAACAGTTGGAGGAATTTCTTCCAGGTGTAATGTGGAAATGGAAAGACAGTGTTTTACAAGTAGCAAGAGAAGAACGTACAGAAGTTTGTCAGGATTATATTTGTCTTCTGGCCACAATTCTACATCATATGACCAAAACTGCATCAGAAAAGAACCAGTCAGAAGAGCTTACCAAACTTCAAAGACTGTTATCACAACCATCAAATCTTGCTGAAGAGTTACTGCCAGCAGTTTCCTTCATCATGGACATCTGTGCAATATTAACACCATCAGCACTGTGGAACATCATCATATCGCTTGTGGCAACATTGCGCAATTCACCAACAATATCACCTTCTATATTTAAACCACTGATGCTTCATCATATGGCTACATTTGATCCATCACTCCAGCACATTATAATTTACTTACAGATGGAATATTCTACTGAAACGCTGACAGAAACTGAGGAGAATAAACTTCGGACCAGATTAGTGTTGGGTGCAAATCATTCTGCTTTGAGTCCAGCTCATCGATTGCTTCTCCTGCAATGGATTAAGGGATATTCAGCTTGTGAAAAGGCAGAGATGGGTGTTTCTACATACATCAGAGAAAAACAACATGATAAATTCTTTCCTTCAGTTTTTGACAGTCTTGATGTTCATATTGAAAAACTTAACATTCTGAATCACTGTCTGGCAAGAAAGAAAGAAAGCTACCCTGAACTTCTGAAAAGCTTACAGTATTTACGGAAATTGGTTCTAGTGACTGGGGAGGTGAAGGCTGCACTTGGTTTATTTAAGACTCTGTTCAGATTTTATAAGATACAAGACAATGAAAACATTACTAAGGCTACACTGGAAATGACATTTGAAATTTTTTCCAAATTTCCTCATCTCATTCCATTTGTCTTGAACTTTATAAGCTGTATCAAAGAAATCAGTCCTGAAAGGTCTGTGCATATGGACATCCTCAGTTCTCTTCACAAACAGGTTCTGGAGACACCAGCAGAAAAAGTTCTACAGCAGTATCAATATTACCTTCAAGTTTTCCAAACATCTGCTAAAGAAACAAGTCTAAATCAGCAGGACACAGTGAAGTATTTGCAGTGTCTTGTTAACACTGCTGTTTGTTTGGATCAATGTGGCTGGTACTTTGGCAATGATGTTTTAGCAGTGTGTAAGAACATACATCTTTATCACTCCACTGAATATGTGTTTTTCAGTTCTAGGTGAACTGTTGTTTGAGATATTTCACAATTATGACGACACTGACATCCAAGACAGAGCCAGGTTTTACTATGCCTTGTTAACTGGAGCCTCTGATACAAAGATTCAAGATGTACTGAGTGCAATGAAGCAAGGTGATGAAGTTACAGGAAACAACTTTACAACCTTGTTACCAGGTTCTCTTAACCTGCCTGAAAAGACTGAATTATTCCAAGCTGACAGTTCTATGTTTGAATGGAGAAGAATAAAAGTTGAGCCAAGAATTACTGTTAAAGAGAAATCTGCAGTGGAAGATAACTTGGATAAATTCACACAGACAGAATTTTTGTCAAATTATTTCAACAGATTACAAATGTTAGAAGTGGAAATAGAAGTTAAATGTTGTTTGAAACTGAAAGCTGAAAGTGAATTTGAAGTCATCCATGCAGTATCAGTTTTACTTGAGAACTGTGAGAATTACCAGCAAGTTAAAGATATGCACATAGCCTGCATGGAAAGAAATGATGAAAGAGAAGTTCACTTTATATTAAAACCCATGGTTCCATTGCCTGGCCACTTCAAAACAAGCATTATGTTTGCTTCGTCTGAAAAGAAGACACACACAACAGTTCTCGATTCACTGAATCTTTCATTCATTGACCTTTTCATCCCATTTCCATGGCAACAGTTAAATTTAATGGGAAATGGAGAAGAAGCTTTCACTAATTTATGGGATTACTTTACTTCAGAAGATCGACAGCCAAGTGAGTCTATCCTATCAGTGAAAGTGTTGCAGTGTACACTGAAGAAAGTACAGTCAGCATTAAGCCAGTTTTTTGTCAATACAGTTTCAGAATCTACAGAACACTGTTATGCTGTATTTCTTCCAGGCAGACGTCACTTACTCTTGAAAGTGACGGAGAGAGTTGAAGAAGAAAAACTTGTAGTTATGATTGCAACTGATTACTGGCAACTTCTACCTCATGTCAACTCTTATTTAGAATCATTGCAATAAGACAGTCAGGAAACTGACTGTATGTGAAAATTTGTCCTTGGTTTTCCGAACAGACTACCAGTGTTTGAAAAGTTGGAACCTTATTCCAATGAACTCTTTTTAGTTCAGAAAAGTTCAGTTAAATATATTATCTATGTCACTGAGCTATAAATTTCAGTTTTCGTGCATTATTTTAAATGCAGTTTAACAATAAAATTTAAAAAGCAAGACAAGTTACAAAGACTTGTTCATGTTGATGATGTTGATCTTTCCGCAACTTTCAGAGTAATTATTATGCATAATTTTTCAGGTATTGTTACTTTATTGGGTAAAATATACCATCACATTCATTAGCAAAAGTTAATTAAAATTAAATTCTATTGTGCATTCCCTCATGGTATATACTATTGTGTAATGTTTAATTATCTGAAATAGTTGCAACATAAAAATTATTGAGAACAGTTTTCTGTTTATAGATGTTAATAACAGTCTGAAAAAATACTCATTTACAATATTTTTTTATTAACTGTTGTAATATGAATTTTGTAAAAACTACATATTTTTATTTATACAGAGAATTTTCTATATATATTTACATATTTTATTACAATTATTAATTTAAAAAAAAAAAAAAAAAATAAAAAAAATAAAGAATCCTCTTGAGAACACATTTAAATAAAACCAATTATAAAACCAAAATTTCAAATAAATTATCACAACAAAGCATAAATAATAGTATCATCTACATTTATACACTGATTAGTTACGTGACTTCATTTCTTTTTATTAGTGCTAAAAGGGCCAGACTAATTTTAATTATTCAGGATCAGATGAGTCTAGAATGTGAAAATCTGTTACTGTGTAAATAACACGAATTTTGTTAAACATGCATTGTTATCATTAACCTGGCATTTAAATAAATTTTTATTTTTATCAAATGTGTGACTGGTCTTGTCTTTTACATACACAACTTACACACATACACATTTGTACAAAAATCCACCTTCTTGAAAAATATGTGGTTTAGGTAATATTTGATTTAAGATAAACAAGAAATAAAAAAATGTCGTTTTAATCATATGTACACTGAACCGTCAGCAGGCCCAACATAACCCACAGCTATAAGGATGGCATCGACCAATGTCCACACACCAAGACCACCAAAACTAAACAGTTTTCCGATTCCTTCTCGCCAGAGACCGAGATAAAACCTGTCTGCCCCAAAACCTCCAAGTGTGACACTGAATAAATGCAGTAGACCATTTGTATCCTCTAGTCCAATTACACAGTCGTTGTTTGTAAAATCTTCTTCTTCCTAAAAAGATAACTTCATGTTTTGCTGTGCACAGAGATGTATAGAAAGGCCTTGCAGGCCAGGTTTTCCTTGGAATGTTTATTTGACACAAAGATGCATTACATGTGTACTGCCAGGAATCTAGCTGGTAACAGTATCGACAATGATATGTTCTTTCAAATGTGTGGTTACCTGTACAGTTAACTCCTTTTCTCACTCTACATGTAGCAGTTTGGATACTGCCATAAACACAGGATGTATTGAACATGCACGAGATGCAGTCTCCACCAAGAATACTGCATTCTACTCCAGATGGACACACCTCACTGGTGTTTATCAGAGAAGAAACCAGTAACCTTTGTTTAGGTTTTTCTGTTTTGTTGTTAGCTGCAGATGATGATGATGAAGTTGATACTTCAGTGGATGTGGATGTGGATGTGGATGTTGATGTTGATATCCTCAATACTGAATTATCTTCTGTGTTGCCTACCATGTTTGATGTCAAAGAACTGAGAACCTGAACCAAAATTAGAATAATAACGTTCACCCATTTTTGTTCGTTTCCCAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21588	AP5B1_middle	AP5B1, middle domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038741	Family	AP-5 complex subunit beta-1	Interproscan
IPR048979	Domain	AP5B1, middle domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR34033	AP-5 COMPLEX SUBUNIT BETA-1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005765	Cellular Component	lysosomal membrane	Interproscan
GO:0016197	Biological Process	endosomal transport	Interproscan
GO:0030119	Cellular Component	AP-type membrane coat adaptor complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf398_4.15 global RNA-seq network