Gene detail

Detailed information of CsqKR_Scaf37_5.42 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf37_5.42	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 13B	chr14	13737491	13752435	+

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf37_5.42

ATGACATGGTGTTACAAACAACCACGTGTCATCAGTAGTGCCACCATCATGCCAGTTCCCTTTGGATATGTCGACCTAGCTGACAGACCTCAAGCTATTCCATGTATGTTGCAGTACTGGGACTGTTCACAGCAGCAGTTTGTTGACTACGTGGAGTTCTCTCTCTCTGAGAATGACAGCACCTCCCTAGACCTGCCCGAGGTGAAGCCCAGCAACTGTGAGGAGCTCATAGTGGCTCAGTCATGGCGTGTGGCCATTTTCAGCTATGAAGTAATACAGGAAGATCTCATTCAGAATAAAGAAGAGTTTTCTGAAGGGGAAGATAATGAAACATATGTTGTGCCAGTGTCTCTTGCTGCCTGTATGTGTGTTGACTCCTGTTATGTGCCATGTATAATACCTGTAATACAAGCTAGTGTTTCCATAGCAGCAGTACAGCTAAACCTTAGCAACCATCTTCACTATCTTGGCAAAGGAACACCAAGCAAGCTGTATCCATTTTACTTCCACCAGTCCCAACCAGATGACCAGCAATTTGCTACACTGACCATTACCTTCCTAAACCTGACCACATCTCACCTGAGTGGATATCTTAGCAGGTCTCTAATAAAGGGTTATGGCTCACTGAAGTTTGAAATGACTGAATACAGAAACCTCACTGTAGAAACTATACTTGACACTATCAGTGTGGAGGCCAGTGTTAATGTCCTTCATGTAGAGAAGCCACCTTTGATAGATGCTGATGTTAATGTTGGTTCAGCAGAGATATGTGTTGGACAAAGTACTGTTCACACTCTGAGTTGTGCAGTTCAGGCCTGGACAGTGCTTGGAGAAGAAGGTTTATGTAAGAAGTCACAAGTAATCTTCAGTTACTTTGTTATCTGTAACGACACACAGCAAACTGTCAGATTTGGTCAGTTTGGTACAGATGAGAACTTGACTCTTCACTCAAGGGAAATGCATGGGTACAGCTGGAGATCTCATAAAAGTGAACAGTTAATTCACCTGTGTTTGGATTCTCCAAGCTGGAAGTGGTGTGAGCCATTCAGTATAGATAAAGAAGAAAACATTGTTAGAAGAGTTAAAGCAAAAGACCAGCACTATACACTGGTCATACGAATTATCATAAGTGGTCAGCTGATAATTTCAAACTGTCTTTCTCAACACATGGAAATTAAACTAAAGAAAACAGGGTCAGGCAACTCGTACAAAGACATCTCAAGAGAAGACAACTCATATGAATGTACAGTGGTAGGTGCTGGTCAGACAATCCCATCATACATTGTGGATGAAGAGGAACTGAATGGACTGATGGTTCGTTTGATGGGAGCACACATGTTGTGGTCACAGGAAGTGTTTGTATTTGGAGACAAGATGAAAGAAAACAGACTTCTTAAGATACCATTGCCTGGCAAAACAGCATATTTCCATGTGTGGTGTCAGATGTTTTGTGAACACTTCAGTGGAGCATCACAAGTGCTGGTTGTTCTCTCACCACTCTACGTTCTCCGATCTCATCTACCACGCTCTCTCTTTGTAAGCATGTACACACCAAAACTGCAGGCTACACAGAAGTTAAACGTGCCAGGCCGAGGCAGAGAGTTTCAGCTTCACTGCGTAGGAGGAGATATCACCCACAACCTGACTTTCCAACTAGCGCTTGGTTTACCAGAATCAAGTCCACCTGTGATGCTGTTTACAGGGTTGATAGATCAGATAGAGAGAAACAAGCAGGAGAAAATGGACATCTTGGAGATGTGTTATACACAGCACAAAGATTTGTCTGTATCATGGCCATACTCACTGCAGCTTGCTAACAAGGAATCAGAAATATCATCTATTTCTCCAGTAACCAAGACAGTTAGTTCTAAAGAAGATGTAGAACAACCCAGCATAGATCTGAGTGTTCAACTCACAGAGTACAAACCTGGCTGCAGCACACTCTTAGTGGACATCTGTCCTTGGTGTCTCCTGACAAATCAGAGTGGAATTGACCTGGTTGTCATGACAGCTGACAAGAAGCAGTATTGTATTCCATATGGCAAAACACAAGCTCCACCTCATTTTAATGATAACCTGTTTTACATTGGCTACTATGATGGAGACACTGTAATGACTTCAGGTCCCATTCCTCTCTCTGATGAGTTGGTTTCCTCCAAGAGATACAACAATGACATAGGCAACCACTACAGAAATGAAGAAATCCCTTCTCATAGACATCTCTCTAAATCAGAAGAAAATGTCAAGCCTCTTCTGTTCTGGAAGGTAGTACCTGTTGCCAAACATCCAGAGACTGAAGATGATCAAAGAGACATCTTTGTTTACCATCTGTCTTTCAAATTCAAAAACAGTTGTCATGATACACCAGAACATTTGTTGTGGTCTCTTCCACTCAGACTTTCAGCCAATCGGGAGGGAATAAGACTGACTCTTTCTGTGCCTGCTATAAAGAATGGACTGGTTCATGGGCAGCCATATTGCATAACAAGCAGCACAGATAATGGAGTTACCTACCTTGTTGTTTCTAAAGATAGAGCTCCGCAGTGTTTTGTGCACAACAAGTGTAACTTTCCTGTGTTGTTTGGACAAGCTTTGATGAACATCTCTCTATCAGGCACTGTCATTCAGGAAGAGGCAGAATTGGTTGCTGAGTTACCAACCTTGCCACCAGGTGGCTCATTTCCTTACACAATGCCATATTTTAACAGTCAGTTTCCAGCAGCAAGTGTCAGCATGCTTCCCAGAATGCACTTCTGTACTCTAGTCGAGAAAGATGAAATGATCACAAAATCAGCCTGGAGTGCAGGTGTTGATATCACTTCATCCAATGACACGTTTGTCAAAATACCAAATGTTGTAGATGTGAAAGTGTCAGTGAAAATGGTTTCCATGATTACACACATCACAATTACTCCGATAGGCAAGGCCGAAGTTTCAGCAAGAGAAATTCGCAGTCGTATTGAAGGAGCTGAGACAAAAATAATGCCATTTGCTAAACATGATGATGCCTTGCCATTGTCAATGGAGTTGGAAGGAAGTACAAATGCTCTGTTGTCATTAATGAACGAAACAGAAACAAGTCGGACTTCAAGGCCCGTTATATCTGCAGGTTTCTTCTTGAAACAGCTTTCAATTGTTTTGTTAAATGAGACAGGTTCTGAGAAGAAAGTTTCAGAAATTTTGCGTTTTACATCAGATCAGGTTTTCATTTCACTCTTTCCTGTTACTAGCTCCAGCCAGGAGGAAGTTGGGAAATCAAGTCTGAGTGTCAGTGTAGGGGACATACAGATAGATAACCAGATGTATGGACATGGACAGTTTGACTTTCCTGTTTTATTGCTACAACAGCAGCAAGACAAACCTAGAGCATCTAGTTATGATGACATGAATTTGGAAGATTTGTCCGTGACACAGAGACATGCTGTTTTAAGACAGTCAAGTTTTCTACATGCTCAAATAGTTTTAGCCTTTGGTGAAACAACAGTTACTGAATCTATTGACATTGCATTAAAGCCACTTTCTCTTTACATAGATGACAATTTCCTATACAGGTTAATGAGAGAGGTGAAAAGTTTCATTCCCTTGAAGCTGAGCTGTGATTCAAATCAGCCAAGCAGGATAAAGCAGCTGCCTCTACCTATCAGGATAACAGCCCTGTCTCTTAGTCAGCCAATCAGAATTCATTACCTGTGTATCCAGCCTGTGAGCATGTTACTGAGTATTCATGCATCTGTGAAAATGTTTTTAGCATCAGATAGGACTCCACTTTCATTTGCAAAGTTTGAGCGAAACAGTTTGTGTACAACAAGCCATCACCTTGGCCATGCTTTAGCCATGCACTATCTATCAGGAGCCATATTCAGAGCAGGAATTGTTGTTGGTTCTCTGGAGATTTTAGGAAATCCAACAGGGTTAATCAGGTCAATAGGAACTGGTGTGGCAGATATGTTCAGACTTCCATATGCAGGCTTGATTCGAGGCCCTGGAGCCTTCATCAGCGGAATTTCATATGGAATGGGATCTTTGTTTAAACATATTTCAGCAGGTACAATAACATCAGTCACTAATTTTGCATCTAGTGTTTCTCGAAACATGGATCGTTTATCTCTGGATCCAGACCATCTTGAACGTCAGGAGGAAAATCGTAGAAACAGACCAGTAGGCATTTCAGATGGTCTCAAGCAAGGCCTGTCTGGGTTCGGACTCAGTCTGCTGGGGGCTGTGGCTGGTTTGGCTGATCAGCCAATAAAAAATGTTATTTCAAATGAATCCGAGACAGAGCATGCAGTATCACGGTCGAGGGCAGCCACTGGATTAGTGACTGGCATGGGGAAAGGTTTGGTTGGTATGGTAACAAAACCTATAGGTGGTGCAGCAGAGTTTGTCTCCCAGACAGGACAAGGAATACTACATGGAACAGGTCTTGGAATGTTACCTGAACGACGTCAGACACCACTTACACGCAGTCATTCAGACAACAGAAATTCTGTATTGAAGTTCTCACTCAAAATGCTAAACTCTTTGCCATCGACTGATCTTCTGCTTGCTGTAGAGGCTACTCACTTGGATCTTGTGGGTCAAGAAGTTCAGGTGGTTCTGTTGCTGAGTACAGAGATCCTGTTTGTTATCAACTGTGAGGAGGATGCCCAGCAACAAGTGTTTGCTGTTCAGGAACTGGAGATCAAAGTTAATCCAAACACCAACAATGTAATTACTGTGACTTGGCCGGACCAAACGCATAGCAAAGTGAGAGAAAAAGAAAATTCCAGCAAGGATAGGATAACTGCCTTTATTGACTCCACCTTTACACTGGCTCAACCAATCAAAGAAGACAAACATTCCACTGAAAGCCAGTCAGAAACAGTAAACTGTGATGTCAATCAAATAACTGCTCCTCGGTATGAGTTTAAACTGGACCCTAATATTCTCTGTGTTTTTGTATCTGCTTTTAATTTTGCTAAAAACAGACTTGTTGGCAGAGGATTTCCAGTATAG

Transcript

CsqKR_Scaf37_5.42

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16909	VPS13_DH-like	Vacuolar-sorting-associated 13 protein, DH-like domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031645	Domain	Vacuolar protein sorting-associated protein 13, DH-like domain	Interproscan
IPR039782	Family	Intermembrane lipid transfer protein VPS13B	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12517	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 13B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
-	-	-	-

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf37_5.42 global RNA-seq network