Gene detail

Detailed information of CsqKR_Scaf37_4.23 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf37_4.23	RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER	chr14	13648900	13657738	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf37_4.23

AAGAATTTATAAAAACAACTTTCGGAATATTTCGCCGACGGAAAGAATAGCCTGTCGGAATTTACCGACATGTTCCGATAACAACTGAAATCTCCAAAACCCCCAATTGACAAATACACCGAAATTGTTGTTTCATTTTCTCTGTGCTAGCAAAAATGAGTTTTGTGCAAGAACCCGATTCCGTACTTCTTTATGCTCACCCTTCCATGGAATCGTTGGCAATGCAGATCGTTGAATGTTGCACTGGACAGTGGTCAGATTCGCAGATAAAAAGACTGAAAGCTGAGCGATCTCTATCAGTATCATCTCAGAGGATGGTGGAGTTTCGAAAATCAATTGAGTGGGGACGTTTTCCTGATGGATTTCCTAATGTATTTATTCAAGATGTCAAATATATGGCCGGCAAAGATGTAATCTTTGTTGGAAGTTTCCATTCTCCAAATGTTATATTTGAACAGCTGTCTGTCCTGTATGCATTTCCTAGGTATTTGGCAAAATCTTTTCACTTCATACTGCCGTATTTTCCTACAGGAACCATGGAGCGGGTTGATACAGAGGGGCAAATTGCTACAGCAAAAACTCTTGCGACACTGCTGTCTGCGATACCGCTGTCAGCTAAAGGTCCTGCTCAAGTGATAATTTTTGACATACATGCTCTGCAGGAGAGATTTTACTTCTCTGACAACGTCATTCCACGGCTTCTTTCAGCAATTCCACTGTTACAGAGAGAAATTGAATTTTTACCTTACAAGTCAAACTTGGCATTTGCCTTCCCTGATGATGGTGCCTTTAAACGTTTTCATTCATATTTCCCTGATGATCACACTGTCATCTGTGCAAAAGTCAGAGATGGCAAGAAGAAAATTGTCACAATTAAAGAGGGGAATCCTGCTGGAAAGGATATTATAATAATAGATGATCTTATTCAAACTGGAGGGACCATGATTGAGTGTGCTAAAGTGTTGAATGATCAAGGTGCGAAGTCAATTAGTGCATATGTAACTCATGCTGTGTTTCCTGGAAACTCATGGAAACAGTTCACAGACAGTGATGTGTCTTTTCAGACATTCTGGATAACTGATTCAATTCCTCATGCCAAGGAGATCAGCCAATACAAACCTTTCAAACTGATGTCTCTGTGTGGAGTGATTGCAGAATCTCTGTTAGAATTAGCGGGTAATTTACGAAACGGAACTTGGCTCTACCTAATGAATTCCCCCTGTCAGTCACAACGGCCTGTGAAAACAGAAATTAATTTGCCAACAGGTCATATTGTAGTCAGTGGAAGATGGCGTGGTACAGAATTGGCCAATACTCTTCAAAATTCGGTTCGTGTGCACTATGATGACAACCTCGGTGTGGTTGACTTCCACACTTCCAGCCATACTGGTGTTATTTATGTTTCTGAGAGTGATATGGTTACGGCCAATGGCTACAAACGTAAAATTGCTATGTTAAGAAAAGCCAATTCAGTTCGTGGTGTTATAATTGCGGAGAAAGCCGGAGTTTCGTCTCAGTATTATTCAAGTCTTCAAAGACTCTGCGTCCTCGAAATAGGATTCGTACTTCTTCCAGTTGCTAACCAGATTGAGGCTGCTGGACTTCTTGCTCAAATGGTTCATTGTGAAGGAAGACAACTCAGCAATCCTTTTTTAAAACGTTCGTATCAACAGCTTGATCCAGCTGTCTTGATGACACTTCAGAGAGTTCCTAAGTTAGGCGAGGTCAAGGCGATGCAGTTACTTGAAAAATTTAACAGCTTGCAAGGTGTTTGCGAAGCTTCTGAGGAGGAATTATCTCAGATTCTTGGTGCTGCCTGCGCAAGAAATGTGAAACTATTTTTTTTATCAGACATGAACAGTTAAACGTTACCTCGGAAGTATTTTTGGCAAGAAGAAAGTAATTTTATTTATGGAAAAGTTTAAAACAGGCTAATCTGAAATAAAATTATTTTTGTATGTACTTTCAAACAGGTACAGTAAATCCCTCTCGAGCCGAGTTTTGAATCATTCAACCATCGTCTGTGACCGGATTATAGACATAATTTGATTGATTTATTGATTTGTTTATTTATTTATTGTTATTATTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTATTATTTAATTATCAGTAATAAAAATGGCAAAGCTGATATAATAGGCCCTACAACTATTTAGAAAGCACTTTACTGTTAGTCACGAATATTGTGCAATGCCAATGGTTTTCCTATTATATATTATTGTTATTGTTATTATCATTAATATATTATTTATTTGAAAAAGACGGTATTTAAACCATAAATAAATAAATAAATCATATA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13793	Pribosyltran_N	N-terminal domain of ribose phosphate pyrophosphokinase	Domain	Interproscan
PF14572	Pribosyl_synth	Phosphoribosyl synthetase-associated domain	Domain	Interproscan
PF17949	PND	FANCM pseudonuclease domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000836	Domain	Phosphoribosyltransferase domain	Interproscan
IPR005946	Family	Ribose-phosphate pyrophosphokinase	Interproscan
IPR010994	Homologous_superfamily	RuvA domain 2-like	Interproscan
IPR029057	Homologous_superfamily	Phosphoribosyltransferase-like	Interproscan
IPR029099	Domain	Ribose-phosphate pyrophosphokinase, N-terminal domain	Interproscan
IPR040646	Domain	Fanconi anemia core complex-associated protein 24, pseudonuclease domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10210	RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000287	Molecular Function	magnesium ion binding	Interproscan
GO:0002189	Cellular Component	ribose phosphate diphosphokinase complex	Interproscan
GO:0004749	Molecular Function	ribose phosphate diphosphokinase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006015	Biological Process	5-phosphoribose 1-diphosphate biosynthetic process	Interproscan
GO:0006164	Biological Process	purine nucleotide biosynthetic process	Interproscan
GO:0009165	Biological Process	nucleotide biosynthetic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf37_4.23 global RNA-seq network