Gene detail

Detailed information of CsqKR_Scaf37_4.22 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf37_4.22	GLUCOCORTICOID MODULATORY ELEMENT-BINDING PROTEIN	chr14	13639930	13645449	-

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf37_4.22

ATGTGGAAGAATAGCGCTGTCTTTGTAACAAGGATGCCTTCGTCTAGCCCTGTAGAAGGAGATATAATAGAGGTGTCATGTGGATCACTGAAGGGAAAACTTCACAAGAACAAATTCTACTGCCCTGGTATACATCGAGAATGTATTGAGCAGTCAGATGGAAAATTTATCTCACCCAAAATTTTTACTATCATGGGAGAAAAAGAGCGACTCAAAGACTGGAAGAATGCTGTACGAATAAATGGTCTGCAACTGAGGCGATACATTGACTCAGGTCAGCTGGACTTCTATCGCCATGACGAGTACTGTACTGGCCGCTGTGTGGCCCGCACGCCCATCGTTCACACTGACAAACCTCTGACAGTAGCACTGGCAAACCGTCGTCGTTCAACAACTGTTTCCAGTACCATCCCACCTGATTTCCCTCTTGAAAAGAAACTTGTTCGCTCACCTGTGCCAAAGGTAGAATTTGTTGGAAGTATCAACGAGCATACGTACTGTCACCTGCCTGATGACAGTGAAAGGTCAGCGGTTGAGCAGGATATTAAACCTGATGTGACTGTCTTACAGAATTTTCTACAACGGAAAACTGAATCTTTCACAAAACCAGCTGCTGAGACTACAACTTCAAATGGAATGAAAGATATGTCAGTTGGCGTGGATGACAATCTTTTGTCACCTGAGGAGATCACATTTCCAATAGAGTTAACCCCTGTAGATGGTTCCGATTCATCTTATGAAGATGATAAGAATTTCTGGACAGGAATTATGGAGTTTGGTTTTTTGGATGTGTTTATGGTTGACATTAAAGACCACATAACATTACTGCGGAAAGATCTGGTCGTGCATGCACGACCTGAAGACTGTCATAAGCTCAGTGTGATTGTCCGAGCTCTTGGTCTAATGGATAAATTTAAGAAGAAAATGTCAAATTACAAAATCAACATGGAAAAACAAGAAGCAAAGCTTGAAAGAGAAATGGAAGAACTTAAATCACAAGTGGCTATTTTTGAACGAAGAAAAGAAGCATTGAAAAGAAAATCAGAAAAGTTCAAGTCACTGTTACAGATAAACACTAAGAATGAGGGTGTAACTGATTTGACAACCACTCAGAACAGCTCAGAGGAAAGCAAAATCACTCCTGATGTAAGTAGCACGGTTTCCACAGTTCCCAGACAGGAAACAGCTTTAACAGAAAATGTGAAAACAAACAATGAGGCAGAGAAATTGGAAATACGACAGCATTCTCCAACTGCAGTTTGCAAGAACAAATCTTTTGTTAAGAAAGTTCTGCTTACAAGTATTCCATCAGATCAGAAAAATGACTTGAAACATGTTACTGTTACAATAGCTCGCTTGAAGCAGTGTTTGGAGAATAATAAGAAGGTCCCTGCATCATCTGTTACTGAAACAATACAACTGATGAACAGTGTGGTGGAAGGCTCATCAACAATAACTGAAAAAAGTGTTTACATTCCCCCACAGGTGACCACCTCTGACGACACATCAGAAGCAGAAGGTGGGAAAGTTGACACAACTTCAGATAGTCAGGTGACAGGTAATGCAGCTGCTGCTGAAACTTCAGATGTTGATGAATCATCAGGAATATCAGAAAACCTGATAAATGATGATGCTGATGAGAAGCCAAAACCAAAGAGGTTGCGATTGGGTGGAACTGTACAGAAGACTAATAACATTGTTACAGATAAACTCAGAGACAAACTGAAAGCTGGAAATTCATCAGTGGATGAATATGTAACCAACACAAAAGAAAAAAGACTTGTAAACAATGATGATTCCACAACAATATGTTGTGAACCAAAAAAAAGAAAAGTTGTTACTGTTGTAGTTGATGACAAGAAAAATGATGTAAAAAGTAACAGTACAAAAGAAAATACAGAACAACAACCAGTAATCCCTTTCTATGGAGTGAAGAAAAAAACTGTCACAGAAATTATTGTTTCTAAGGAAGTAGCAGAAAAGGCAAAGCATATCTTACGAGGGGCAAATGAAGTCCTCACAGAAGTTGTCAAGAAGAAAGGTAGTGATGACTCCAAATCAGAAAAAACTCTGAAGAAAGCTGACAGTAAAATGGAGTCAGTGGAGGTGATGGATTCTGAGCTGGGAACTAAAACAGAGATTTCCTGTCAGACTCCATTAGACGGAGTTCGAGAAAAGGTTGTAGAATCAGGAACATCAATGGTTGCTAGTCGCAGATCAACAAGAAAAACACCACATTTGTTTACCTGGGGTTCAAAGGTAGATGTTGTGAAAAAGGTTTTGTAA

Transcript

CsqKR_Scaf37_4.22

GAACGTCAGTGACGTCACGGTATGTAAAAAAAACACACAAAAAAACAACGTACCCGTTCGCCATTTTCGACGGATACATGTTATTGCATGTGGAAGAATAGCGCTGTCTTTGTAACAAGGATGCCTTCGTCTAGCCCTGTAGAAGGAGATATAATAGAGGTGTCATGTGGATCACTGAAGGGAAAACTTCACAAGAACAAATTCTACTGCCCTGGTATACATCGAGAATGTATTGAGCAGTCAGATGGAAAATTTATCTCACCCAAAATTTTTACTATCATGGGAGAAAAAGAGCGACTCAAAGACTGGAAGAATGCTGTACGAATAAATGGTCTGCAACTGAGGCGATACATTGACTCAGGTCAGCTGGACTTCTATCGCCATGACGAGTACTGTACTGGCCGCTGTGTGGCCCGCACGCCCATCGTTCACACTGACAAACCTCTGACAGTAGCACTGGCAAACCGTCGTCGTTCAACAACTGTTTCCAGTACCATCCCACCTGATTTCCCTCTTGAAAAGAAACTTGTTCGCTCACCTGTGCCAAAGGTAGAATTTGTTGGAAGTATCAACGAGCATACGTACTGTCACCTGCCTGATGACAGTGAAAGGTCAGCGGTTGAGCAGGATATTAAACCTGATGTGACTGTCTTACAGAATTTTCTACAACGGAAAACTGAATCTTTCACAAAACCAGCTGCTGAGACTACAACTTCAAATGGAATGAAAGATATGTCAGTTGGCGTGGATGACAATCTTTTGTCACCTGAGGAGATCACATTTCCAATAGAGTTAACCCCTGTAGATGGTTCCGATTCATCTTATGAAGATGATAAGAATTTCTGGACAGGAATTATGGAGTTTGGTTTTTTGGATGTGTTTATGGTTGACATTAAAGACCACATAACATTACTGCGGAAAGATCTGGTCGTGCATGCACGACCTGAAGACTGTCATAAGCTCAGTGTGATTGTCCGAGCTCTTGGTCTAATGGATAAATTTAAGAAGAAAATGTCAAATTACAAAATCAACATGGAAAAACAAGAAGCAAAGCTTGAAAGAGAAATGGAAGAACTTAAATCACAAGTGGCTATTTTTGAACGAAGAAAAGAAGCATTGAAAAGAAAATCAGAAAAGTTCAAGTCACTGTTACAGATAAACACTAAGAATGAGGGTGTAACTGATTTGACAACCACTCAGAACAGCTCAGAGGAAAGCAAAATCACTCCTGATGTAAGTAGCACGGTTTCCACAGTTCCCAGACAGGAAACAGCTTTAACAGAAAATGTGAAAACAAACAATGAGGCAGAGAAATTGGAAATACGACAGCATTCTCCAACTGCAGTTTGCAAGAACAAATCTTTTGTTAAGAAAGTTCTGCTTACAAGTATTCCATCAGATCAGAAAAATGACTTGAAACATGTTACTGTTACAATAGCTCGCTTGAAGCAGTGTTTGGAGAATAATAAGAAGGTCCCTGCATCATCTGTTACTGAAACAATACAACTGATGAACAGTGTGGTGGAAGGCTCATCAACAATAACTGAAAAAAGTGTTTACATTCCCCCACAGGTGACCACCTCTGACGACACATCAGAAGCAGAAGGTGGGAAAGTTGACACAACTTCAGATAGTCAGGTGACAGGTAATGCAGCTGCTGCTGAAACTTCAGATGTTGATGAATCATCAGGAATATCAGAAAACCTGATAAATGATGATGCTGATGAGAAGCCAAAACCAAAGAGGTTGCGATTGGGTGGAACTGTACAGAAGACTAATAACATTGTTACAGATAAACTCAGAGACAAACTGAAAGCTGGAAATTCATCAGTGGATGAATATGTAACCAACACAAAAGAAAAAAGACTTGTAAACAATGATGATTCCACAACAATATGTTGTGAACCAAAAAAAAGAAAAGTTGTTACTGTTGTAGTTGATGACAAGAAAAATGATGTAAAAAGTAACAGTACAAAAGAAAATACAGAACAACAACCAGTAATCCCTTTCTATGGAGTGAAGAAAAAAACTGTCACAGAAATTATTGTTTCTAAGGAAGTAGCAGAAAAGGCAAAGCATATCTTACGAGGGGCAAATGAAGTCCTCACAGAAGTTGTCAAGAAGAAAGGTAGTGATGACTCCAAATCAGAAAAAACTCTGAAGAAAGCTGACAGTAAAATGGAGTCAGTGGAGGTGATGGATTCTGAGCTGGGAACTAAAACAGAGATTTCCTGTCAGACTCCATTAGACGGAGTTCGAGAAAAGGTTGTAGAATCAGGAACATCAATGGTTGCTAGTCGCAGATCAACAAGAAAAACACCACATTTGTTTACCTGGGGTTCAAAGGTAGATGTTGTGAAAAAGGTTTTGTAAACAATTTTCTGATAGAGTAATGTAATGGTGAATACTAGGCTAATAATAATAAAAAACTTAATTTTTCTTTTTGTTCATTCTTTATTATTATTAACTTAAATAATATTATTGTTTGTATCAAAATTGTTCTCACATACATTAACACGTCATAGTAGCCTATATAACAAGTGTTACAAAATTCATTGTTAATATATATATATATATATATATA

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	SAND

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01342	SAND	SAND domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000770	Domain	SAND domain	Interproscan
IPR010919	Homologous_superfamily	SAND-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10417	GLUCOCORTICOID MODULATORY ELEMENT-BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf37_4.22 global RNA-seq network