Gene detail

Detailed information of CsqKR_Scaf36_21.23 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf36_21.23	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G	chr5	14741449	14757699	-

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf36_21.23

ATGTCTGCATCAGACATACCTGATGTAGTGAAAAAGAACGTCAGAGCAGTGCTGCTTTCAAAAATAGGGGGAGTAGTTGCATCCCAGTTCCTCAAAGATTACAGAACCCTGGTACAGGAAAAACTGAACTATGTTCAGTATGGCTTTCATGATATTGAAGGTTTTATAAATGCTATTCCAGAATATGCAAGATTTGAATATTCTCAAAAAGAAATGGCGTATAAAATCTTTGGAGTTGGAGACCCAAACACATACATGTCAATGGCAGCCAAAAAAGCTCAGGGCAGCGTGGCATATTCTGACAGTAAAAAACTGGTAGAGAGTACTGACAAAGAGTATCTAAAGAAAAAATTTGGTGATGTTGGTGAAATAGGTGAAATTAATTTGACCAGCAGATGGGTGTTCATAAGATACAGAACAAAGAGTGGTGCACTGGCAGCTTTGCAGAAATACTCTTCAGACTATGACATGCATGTCGCTGATGAGAAGAAAAAAACTGGCAAATCTGTTCAGCAAAAGAACACTACAAAAAACGATGGATGTTTCAACTGTACGAGTCCTGGACACAAGGCATCTGAATGTCCACTTCCCTGGGCTTCAGAATGTTTCAACTGTAAGGAATTTGGACACAAAGCTAGTAACTGTCCTCAAGCAAAAGGTACAGGCAAAAATGGGACAAAAAAGAAGAAAGATTTAAAAGATGACAAAGGTTTGTGTGTTTTTGTTGGAAACATCTCACATTCAAAATCAGAAGAAGAATTCAGAAAGTTAATTGATAATTATAATCACAAAAATTGTCATGTTGTTGTGAAGGAGAATAAAATATTTGCATTTGTTACAGTGGAATCAGAAAATGATGCCCAGGCACTGATTAAAGGGTTGCATTTGTTCAACTTTGACTTGCCCAACAGTATTAAAACGCCATCCTGGACATCGTTGCCTGTGAATGCAGAAACAAGCTACCACACTGACAGTTCCTCCTTGTGCAGCACTCACAACTCTTACGACTCTGATGTGTCGTTTTCAAATTTCAACATACAGATTGGTGCTGATGGGGACAAGAAAGTTATTTCCACTGCAGTCAACAATGGGGTTGTTGCACTATCAGGATCCTATGGCGGGTGTGTCACAGGAGGAGGAGGAGGAGACTGCATCTCACACCTGGATGATGTGTATGCCGACATGCCGGAGTTGGAGGACATTGAGGACATTGAGGACGATCATCTCGACAGTGATGGGGAAGAGATTGATCCTGTTAAAATTTTTGTCGGGAATTTTCCAGCTGGAACGACCGAGAAAGAACTGAAAAGTCTCTTCTGGGTTTATGGTGTTCTCAAAGTGGATGTGATTAACAGTGCAATGAATAATAAGTGCACAAAGGCCTACGTTTGGTTGCCAACTGCCAAAAAAGCCAGGGATGCTATTGCTGGCCTAAATCAGAAAAACTATTATGGATGTTATCTTCTTGTTGATGCACCAAAGTTTGATTCAGTTTCAAAGGAGAAAATTCTTGGATATAATTCAAACACCGAAAATTCATCTACAAACTTTAATTTGAAATTCAAGTTGGAGAGTTTTCCATATTTTATTGACAAGATGAAAGCGTGGAATAACACCATAGAACCAGGCATGAGAATAGAGGTGTTTGTTTCTACTGTCGAGAATAATGACACATTCTGGGGTCAAGTTATCAGTGAGAAAGAACAAATGATAAAACTGGCCATGATAACTGAAGAACTTCAGAAATCGTCTTCACGTTTATCTCCCACCAGAGGATTAGGAAGGTGCGCAGCCAAGTTTGGAAATGAATGGTACAGAGCTTGGATTATAAAGGTGTTCTCAGAACACAACAAAGTCCTTGTTTTCTTCCTGGATTACGGCAACACCAGTATTGTGAACTATGAAGATGCTCAGTTCATTCCTTCCAAATTCTGGAATCTGCCTCCAAGATGTCGACCATTCAAAATAATCACTGTGCAACATCTTTGTTTTGCAGGCAAATGTCCAAAGAACCTGAAAGAGTTAGAATCTGAAGTTATTGAATGCCAAGTAATTTCTTCTGCATCATCGGCTGAGAGTTTCATGACTGAAATTGTACTTCATGAGAAAAAGTAA

Transcript

CsqKR_Scaf36_21.23

GCATCGCTTTTTTGGTACAAAGTAACGAGAAAATTTCAACTTCCGTTTTGTCTCTAATGGCTTTATGGTGGCGGCGTTTTCGATGTTTATAAAATTGTTCCATAATAACTTCTAGAGATACATACTAAAGAAAAAGTTATTTAAAATGTCTGCATCAGACATACCTGATGTAGTGAAAAAGAACGTCAGAGCAGTGCTGCTTTCAAAAATAGGGGGAGTAGTTGCATCCCAGTTCCTCAAAGATTACAGAACCCTGGTACAGGAAAAACTGAACTATGTTCAGTATGGCTTTCATGATATTGAAGGTTTTATAAATGCTATTCCAGAATATGCAAGATTTGAATATTCTCAAAAAGAAATGGCGTATAAAATCTTTGGAGTTGGAGACCCAAACACATACATGTCAATGGCAGCCAAAAAAGCTCAGGGCAGCGTGGCATATTCTGACAGTAAAAAACTGGTAGAGAGTACTGACAAAGAGTATCTAAAGAAAAAATTTGGTGATGTTGGTGAAATAGGTGAAATTAATTTGACCAGCAGATGGGTGTTCATAAGATACAGAACAAAGAGTGGTGCACTGGCAGCTTTGCAGAAATACTCTTCAGACTATGACATGCATGTCGCTGATGAGAAGAAAAAAACTGGCAAATCTGTTCAGCAAAAGAACACTACAAAAAACGATGGATGTTTCAACTGTACGAGTCCTGGACACAAGGCATCTGAATGTCCACTTCCCTGGGCTTCAGAATGTTTCAACTGTAAGGAATTTGGACACAAAGCTAGTAACTGTCCTCAAGCAAAAGGTACAGGCAAAAATGGGACAAAAAAGAAGAAAGATTTAAAAGATGACAAAGGTTTGTGTGTTTTTGTTGGAAACATCTCACATTCAAAATCAGAAGAAGAATTCAGAAAGTTAATTGATAATTATAATCACAAAAATTGTCATGTTGTTGTGAAGGAGAATAAAATATTTGCATTTGTTACAGTGGAATCAGAAAATGATGCCCAGGCACTGATTAAAGGGTTGCATTTGTTCAACTTTGACTTGCCCAACAGTATTAAAACGCCATCCTGGACATCGTTGCCTGTGAATGCAGAAACAAGCTACCACACTGACAGTTCCTCCTTGTGCAGCACTCACAACTCTTACGACTCTGATGTGTCGTTTTCAAATTTCAACATACAGATTGGTGCTGATGGGGACAAGAAAGTTATTTCCACTGCAGTCAACAATGGGGTTGTTGCACTATCAGGATCCTATGGCGGGTGTGTCACAGGAGGAGGAGGAGGAGACTGCATCTCACACCTGGATGATGTGTATGCCGACATGCCGGAGTTGGAGGACATTGAGGACATTGAGGACGATCATCTCGACAGTGATGGGGAAGAGATTGATCCTGTTAAAATTTTTGTCGGGAATTTTCCAGCTGGAACGACCGAGAAAGAACTGAAAAGTCTCTTCTGGGTTTATGGTGTTCTCAAAGTGGATGTGATTAACAGTGCAATGAATAATAAGTGCACAAAGGCCTACGTTTGGTTGCCAACTGCCAAAAAAGCCAGGGATGCTATTGCTGGCCTAAATCAGAAAAACTATTATGGATGTTATCTTCTTGTTGATGCACCAAAGTTTGATTCAGTTTCAAAGGAGAAAATTCTTGGATATAATTCAAACACCGAAAATTCATCTACAAACTTTAATTTGAAATTCAAGTTGGAGAGTTTTCCATATTTTATTGACAAGATGAAAGCGTGGAATAACACCATAGAACCAGGCATGAGAATAGAGGTGTTTGTTTCTACTGTCGAGAATAATGACACATTCTGGGGTCAAGTTATCAGTGAGAAAGAACAAATGATAAAACTGGCCATGATAACTGAAGAACTTCAGAAATCGTCTTCACGTTTATCTCCCACCAGAGGATTAGGAAGGTGCGCAGCCAAGTTTGGAAATGAATGGTACAGAGCTTGGATTATAAAGGTGTTCTCAGAACACAACAAAGTCCTTGTTTTCTTCCTGGATTACGGCAACACCAGTATTGTGAACTATGAAGATGCTCAGTTCATTCCTTCCAAATTCTGGAATCTGCCTCCAAGATGTCGACCATTCAAAATAATCACTGTGCAACATCTTTGTTTTGCAGGCAAATGTCCAAAGAACCTGAAAGAGTTAGAATCTGAAGTTATTGAATGCCAAGTAATTTCTTCTGCATCATCGGCTGAGAGTTTCATGACTGAAATTGTACTTCATGAGAAAAAGTAAATGAACATTAAGAAGAGAAGAATTTCATACTTTGACTTTAAAAACTGTTACTCTCCACTGTGATGTGTAGACTCAACAAAAAGTACTTAATTCAGTGTTCTGTTCAAGAAATCAACCTGTACATTGAAATTCAGACATTTAACTGTTTCCTTAAGGTTTTATGAATTTTCAAACTTAAGATAATTATATTGAATAATTATTTTTGAATTTATTTGAGCAAGTTTGACAGTTTGAACAAATTTTTTTTTTTTTTTTTTTAAACATGTTGAAAATTTCTCATGCTGCAAAAACCAAACAATTTTGTTTTGTCTTGTGTGTTTACACTCATATTTTAAAATCAGGTTTTCATACGTAATGGATTAGAGATAATCATTTTTATTAACATTTTAAAATGAATCAGTTTTAATGGTATTTGTTTTTTGTTACCTTATTGATGTGAATTGTATTAAATTGTTATTGTTCAAAAACA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF00567	TUDOR	Tudor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR002999	Domain	Tudor domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR025605	Domain	OST-HTH/LOTUS domain	Interproscan
IPR035437	Homologous_superfamily	SNase-like, OB-fold superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR041966	Homologous_superfamily	LOTUS-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10352	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf36_21.23 global RNA-seq network