Gene detail

Detailed information of CsqKR_Scaf36_12.13 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf36_12.13	HOMO-OLIGOMERIC FLAVIN CONTAINING CYS DECARBOXYLASE FAMILY	chr5	13855829	13860223	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf36_12.13

GAGAAACCTTTTTTGTCTTTTTCAAAAGTTACTAAAACTAACTGTTGAAAGACATAGCAGTTTTATTTTTTTAAATGAATTAAACAGTTTTCGTAGTAATGCATATTTTATCAGTATTTCGAGATTATACTATTTCCGTGTTACTGTTAGGACTAAGGGAAATAACTTTTCGTTGTTAAAATACAAAGTTACGTTCAAAGATTGTTGTGTGGATTAAATTAATAACAAAACTTTACATAATCTAATTTTATTTTTATTTTTTCCCCATAATTTAAGTTAATAACAAAATGATGAACTATTTATATAACAATTAATTAATAATATGTGACAGAAAACTAGATGAGATCAGAGATGTGAACGTAAATTCGGATAAAACGATGAAAATTCTTATTGGATGTACGGGAAGTGTTGCGGCTATCAAAATCCCAAATCTTGTGAACGAACTGCTTGCCAGTGATTTAAAGCCAGAAGTGAAGGTAGTAGCTACAGAGAATGCAATTCATTTCTTTAATCCAGACTCGCTGCCTGTTCCAGTCTTGTTGGATAAACATGAATGGGAGCGGTGCTGTAAGAACAAATCCGATCCTATCCTTCACATTGAACTACGGCGCTGGGCCAACTTGATGGTCATAGCTCCTCTTGATGCAAATACACTAGCCAAAATGAGTCATGGAATCTGTGACAATCTACTTACATGTGTTGTTCGAGCTTGGGATTTAAAGCGCCCTCTACTGTTTGCTCCAGCAATGAACACATTGATGTGGGAGCATCCACTGACAAAGCAGCAAATAGACATTCTTACTGGCTTTGGTTACAGAGAAATTCCCTGTACTAAGAAAGCTCTAGCTTGTGGTGACTTAGGATATGGAGCCATGGCTGAGGTTTCTACAATTGTTTCAACAATTCTGGATGTATCAAAGCAGCAGCTTTCTTCTAAAAGTTGAAAAAGGAGAAGAAAAGAAGAAAAAAAAAACGCTGAGAAAAATGATTACATACGAAATGCACATCATATGATTTGACTGATTCAAACATAATACATCAAGATAAACTTTAAGTATCCCAGAAGAAAAGAAAACAAAAGAAAACAAAAGATAATAAATAAAAATCACCAGATTAAACAACAACATTAAGGTCAGCTAGTTATTGTTTAGTTGTTATTTATGCTTTTTTAACACTTGTCTGATTAATAACCTGATTAAGCACAAAAATAAGCGGTACAAACATTAAAAACATTTGAATATACTGTCTAGGTTATCTCCTTTGACTAAACCAGTTTTATAGCTGGTAGTTAATGTATGACACAGTAAAAATATCTTAATCCAACATCTTCCTGCTCTGTGTCATGATATATGTGCTTGAATATTCTTGTCATCTAATACAAGATTATCGTAAACCATTAGAGACTGATGATATTAACTCCCTGCACATGTTTCAGATCTGTAGTATAATTATATGTGATTTCTGAGCACTTGGAATGAATCAGAGACAGATTTGTGATGTTTAACATTTGAAGTATAATTATACGTACTTCATTTTATTGCAGTTTTGATGTAAAATAAAAAAAAAAAAAAAAAAAATTAAAGTAATATTTCTGAAGGTGAGCCATGAGGATTCAGAATTAATGAATTAATATTTGATAGGTTTCATAGCTGTTCATTTTTAAATTTTCAAAGTTTTATTTTTATTTGTTTATTTGTTTAAAAGAATATAGCTGTTTGGTTAGGAACTATATTTACTTAAATAATGTGTGTGTGTGTGTGTGTGTGTGTTCTGTGAAAAATACTTCTTCAGCGCTTAATTGCTTGTTTAGCTTCTAAAATACCATTCTGAAAATCATTTTCATGTACATAATTACAAATAAATTGTTAATTAACAATTATTTTGTTCGGATATATTGTGGCAACAAAATCAATATGGGTGAAGCTACTTCTGTCCATAGTGGTGAGTTGAGAATTATTGTTGCATTCTTAAGTTATCAGTTTTATCCTGTGAAGGTTAGAATTGCCTGATTCTGTTAGGCTATGCTGAGCTGCACAGGGCCATTCAGCCTGAGCAAACACATTGTAAGTTCAATTTTCAATTAGAAAAGCAGTAACTACTTTTTCTCTTTTGTTTTTAAAAGAAGAAGAAATAAGAAAAGTCATTATACTGATAATGACAAAATTTTGAAAATCT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02441	Flavoprotein	Flavoprotein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003382	Domain	Flavoprotein	Interproscan
IPR036551	Homologous_superfamily	Flavin prenyltransferase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14359	HOMO-OLIGOMERIC FLAVIN CONTAINING CYS DECARBOXYLASE FAMILY	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004633	Molecular Function	phosphopantothenoylcysteine decarboxylase activity	Interproscan
GO:0010181	Molecular Function	FMN binding	Interproscan
GO:0015937	Biological Process	coenzyme A biosynthetic process	Interproscan
GO:0071513	Cellular Component	phosphopantothenoylcysteine decarboxylase complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf36_12.13 global RNA-seq network