Gene detail

Detailed information of CsqKR_Scaf35_22.52 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf35_22.52	E3 UBIQUITIN-PROTEIN LIGASE PELLINO-RELATED	chr1	25552902	25559328	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf35_22.52

ATGCTTGACAACACAATAAGGTCTGCTGATGATGTGTCAAAACCACCAAACCACAATGTTTACGAGTCTCCAACATGCAAACCACCTGCAGGACATCAGAGTGCAGCCAAGAACGAGGCACAGCCTCAGAGCAATGATAATATTAAATACGGAGAGCTTGTAGTGCTAGGATACAATGGTCACCTCACAAGTGGAGATAAAGGGAGGCGACGCAGCAAATATATTTTACGAAAAAGAACACGAGCTAATGGTGTCAAGCCTTTTAGAAAACACTTAGTAGTTAGTCCACAGTCATCCAAGGCAGTACAGGACAGTGAACAGCATTCTGTATCATACACACTGTCTCGCAACAAGGCTGTTGTAGTTGAGTACAAACCTGATGACGACACTGACATGTTTCAGATTGGCCGCTCATCTGAACATCCAATTGACTTTGTTGTCATGGATACCATTCCTGGCCATTTGAGGACTACAAGTGAAAATGTTACGCAGAGCACAATTTCCCGGTTTGCTTGTCGTATTATTATTGACAGAAATCCACCATACACAGCTAAAATATATGCAGCAGGCTTTGATTCAGGGAAGAATATATTTCTAGGAGAGAAAGCTGTCAAATGGCACTCAGGAGATGAGATAGATGGACTGACTACAAATGGAGTCTTCATAATGCAGCCACAAGGTGGATTCAGCCCATCAGCAAGGCCAAATGTGTGGAGAGAGGTGTCAGTTGATGGGGGCATCTTCCCACTTAGAGAATCCAGACCATCCCCACTTAAGAGTTGTCAGATATTAGAGGAAGATAATATTTTGAGAGATGGCACACTAATAGATCTTTGTGGGGCAACTTTGGTCTGGAGGACAGCTTTAGGTCTAATAACTTCACCAAGTGAACACGAATTTCAAGTTATGGTTCATGAAATCAATGCTGGTCGACCTCAATGTCCAGTTGGCTTAAACACTTTGGTTTTACCAACTCGAGGATCCTTGAACCTCCGTGACAGACAGCCTTATGTCTACCTCAAATGTGGACATGTACATGGCAAACATGAATGGGGACAAACTTCTGAATCCAGTCGCAAGTGTCCATTATGCCTAGAGGTTGGACCTTTTGTGAAGCTTGAAATTGGCTGTGAACTAAGTTTATATGTGGATTCTGACTCACCTACCTACTGTTTCAGTCCATGTGGTCATGTAGCTTCAGAAAATTCTGTCAGGTACTGGTGTAGGGTGACGGTGCCTCATGGTTGTCATGGTTTCCGTGCCATCTGCCCCTTCTGTGCCACACCATTGACTGACCCAGGATATGTAAAACTAATCTTCCAGGACCATACTGATTAAACACGATCTTCATAATGTGATCTACAATGAATTTGTGATTGAAAATAAAGCAGCATTTTACATGGTAAAAAAAACAACTAAGAATAACCAACAAAAATCAGTTTTATTTTCAGATTTAATGACGTAATGTTTTAAAGTAGTTTTTTTGAAATACATTTTTGTTTTAATACTGAACAAAAAGAAAGAAGAGATTTGAAAATGTTTGAGAAAAAATATATTTGATAGCACAACTCTCTCTTCTGAATGTTGCACATTGTTTTATATTAGCATATCATATTTTGTACTTGTAAAATATTAAACCATGCCATGTAGTGCAATAATGACAGTTTATGTTACAAGAGCTTCTTGACTTTTTATGTTCTATAAATACATACTGTCATACTTTTCTTAAACTTAAATGTTAACTACTGTTCTGAAAGGGCATTTTGTGGACTTTTTGAGAGGTGTAGTTTAAAATTAAAATAATAATAATAATTTTATCTTTAATTTTATTGTTCTAAAATTTAAAAAAAAGTTGTGCAATAAGAACCTTTTTTTATATATCAGCTTCTTTACAAATTTTAAATCATACATATATACATACTGTAACTAAATAACTGGAGAAAAAAAAACACACTGCTTCCAAATCTTCTAGTATAGTTATGACATTATCATAATTATATATATATATATACATTAATTTCCAATTTTACTTTGTTCTGATGATTTTCTTGCCTTGATATAAATGTTTTGAATGAAGGAAATGTCTCATTTTGCTGGTATTTCTAGCACAAGTCTATACAGACACACACAGATATATGTTTTAATGATTATAGAAAAATCAGAGTCCAACTTAACTGATTATTATTTTGGTATTTTAAAATATGGCTTAAAGATAAAGATTTTTGGTGCTATGATAAATTTATGCAAATGTTTTTTAAAGTGGTAAGATCAACTTTTATATGAACAGAAGTTGTTTGGAGTTGAATATGTAAATAGAAAACATTATGCAACAAATAATCATAATTAGAGTTAATATTTCACACTCTTGTAAATCTATTTGTAATTATTAGAGCTGATGAATAATTTAGACTAGAAATAGGTGACTGTCACTGTGACTAGAAAATAAACATTCTGTTATCCTAACCAGTAAATACTCAAATAACAGATTTTTTCTGTGGCACATTGTGATGTCTAATATTCATAATACAGTATAATTTTTTTTTTTTTTTAAAGTTGTTTCAATAAAAGGTTTAGACAGTCTGAATTTTATATGTATATATAAAATAAGGTAATT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04710	Pellino_FHA	Pellino, FHA domain	Domain	Interproscan
PF20723	Pellino_RING	Pellino, RING domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006800	Family	Pellino family	Interproscan
IPR048334	Domain	Pellino, FHA domain	Interproscan
IPR048335	Domain	Pellino, RING domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12098	E3 UBIQUITIN-PROTEIN LIGASE PELLINO-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008592	Biological Process	regulation of Toll signaling pathway	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf35_22.52 global RNA-seq network