Gene detail

Detailed information of CsqKR_Scaf35_13.37 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf35_13.37	WD REPEAT-CONTAINING PROTEIN 81	chr1	24593076	24610660	+

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf35_13.37

ATGAATATTTATTTACAGGTTTCACAAGACTGGTGGAAACAATGTTGTCAGGGAAAGGTAAAGCTACTCCAGGCTCTGGATGTTATACAACAAACTCAGGCTGAGCAGTTATTGGCTGGCACCTGTCTGACAGTGCCTGAACAGTGGAAGAAAATTAGTGTTAAAATTGTGCCAAAGATCACAGAAAAAGTGCAGAGTTTACGTGATGGGCCCCTTTACCCTACTGAATGTGCTAGAAGTCTGATTGAATACTTGGCTACAACATCACAAGAAAATTTTCGCAACCAGTGGCATGCAGCATATAGAAAATTTAAGAAAGATCATGTGCCAACTGAACTACATTGTGGAGAGGAGCATTTTGTGGTCTTTAAGAAATATATGTGGAGAATGTTACCTGATGTCTACATCAATTTGGATGATGCTGCTTCATCAGCTGTGTTGAATGACAACAAAAAGGTTAATAAATGTGGGTGGTATAACGTCGTTCCAACCAAAGCTTTTGTTGAGTCTTCTAGTCATTACTTTTTAATACAGCCTAGTCTTTCATACAGTCTCAGTGACATTGTATCATTTAGCCCAGCAATACTGAACTCATCAAATGCTCACACACTGTTTATATTGTATCAGATTCTTCAGGCAATGAAAACATTTCACGAAAATGGTTTGTCTATTGGAAATATAACTATGCACAATGTAATGCTGGACAAGAATTTGTGGGCGTATGTCAGTGTACCTCACCTGCACAGTGTAATGCTTAGTGAACAGAAAATTAATTCTGATCAAAAAACTCTGATAGCAGATTCTAAACTGATTAAGCCAGCCAAACAGATTTGTAAATCAGAAACATCAAAAAAGAATGTGTTACTGACATCATCTCCATCAGGTAACCATTCCAATTCTCAGGGATCAAACCATGATGCAAAAAAAGATTTCACTAAAAAGAACAATATATTTTTATCCCGAGTTCTGAGACATGATTCAGGGGGTCCTGAATTACTTACAGAAGGTGAACAGTGTTTGCGGAATGCACAGGAGTTTCTTAACAAATGTCATTATCAGCAGTTTGAAGTGCATGATCTTGCTGATGTTGTGAAAAACTGGGTCAACAGACAAATCAGCAATTTCAAATACCTAATGATTCTGAACCATTTGGCAGGACGAAAAATGGGTGACCCAAACAATCATCCAGTTTTACCATGGATAATGGACTTCACCTCTCCAGATGGCAATTTCCGAGATCTCACAATGTCCAAGTTCCGACTGAACAAAGGAGATGGACAGCTAGACTTGACTTTTAGTACGATGTCTTTGCTGGGTGATGACGGAACTGACATTCCTCATCATGTCTCAGATGTTCTGTCAGACATCACCTACTATGTCTACAAAGCCAGACGGACTCCCAAATCAGTTTTGTGTTCCCACGTTAGAACCAACTGGGTTCCACATGAGTATCCCAGCAGTATTGTGAGACTTCAGGAATGGACACCAGATGAGTGCATTCCAGAGTTTTTCACTGACCCCAATATCTTTGTCTCTGTCCATGATGATCTGCCTGACTTAGAAATCCCTGGCTGGTGCAGCTCAACACAGGAGTTCATCATAAAACATATCTCTCTGTTGGAGAGTGAGAAGATCTCTGAATCACTGCATCACTGGATTGATCTCACTTTTGGATACAAGCTAACTGGTAATGCTGCTGTCAAATCAAAGAATGTTTACCTCCAGCTTGTAGACCAACACAAAACCATGACACGACATGGGGTTGTTCAGCTGTTCTCACAGCCTCACCCCCATAGACTGCCACTAACATCTTTCTGTCACCCACACCCACCAAAAGTAACAAGGGAAATTCTCAGTTCACAGTTGACAGGGATTGGAATTTCAATGGAAGATGCTGAAGCTAAATCAACTGAGTTAAGTTTTCTTGGCAGTTTTGAGCCATTGGATCAGACAAGACCAGACAATGCAACCATTCACCTTCCTAAAAGTTTTCAACCAACAGCTGAACTTGAACACTGTGAAGCACAGAATAATTTTTTGACAAGAAGTATGTTAGCAAATGTTGAGCCAGCTAAAAAGGCAGATGCAATTGTACCTGAACACACCTGTATTGTCACAGAAGATGTGCTTAGATTTGCTTGTCTTATGTGTGAGATGTTTCTGGCACCCAAGCTAATGATGCAGGATTCCACACCATCTCTGGCTTCCAGATACCAAAATATCAAACGCTTGTCTTCTGCAGACTTCATGGAACTACCAAGACCTCTTCAAAAAGCTGCATCTTTCCTTATACATACAGTGGAAATAAATTGTGATGGAGCAAATGGGACACCCATCTTTAGTTATCCTTCTATAACAACACTTGGATTACCCCCACCAACTCCCACACAGCTCCTTCAGTTGTACTCAGGAATATTTCCCTTTCCAGGATATTTCATTGACCTTCATGCTTGTATTTGTGAGTTGAAGAGCAAGGATTTTGAAGTGGAATATATTCAGAACAGTAACAAATCTGTGACAGAAATGACCAACTTGATCAAACAGACTGAACGACAGAAAGTTCCACTAATAGAACGCTTTCTTACACGGTATCAAGGAAAACTTGATTCTGAGGGTCTGCATTTGGTTTTGCCATATATAGAAGATCTCTACAACAATGAAAACACAACAGTGCAAGCTGCATGGTCACTTTTTGGTATTGTCAGTCGTGAACTTGGTTTCAAGGAAACCACTTCCAAATTTATGCCATATTTGATCAAACTATTTGCTGGAGAACATCTGACAGCCAAACATGCCAAACTATACAGCAGGACCTTCCTTATGCAACTTATAATCAGGCTTGGACTTGAGACGTTCCTGTTGAACTTTTCCACTCTTTTAGTTGAAGCAGTGTCTGGTTACAAGGACTTTTCTTTACCTAGCAAATATTATCAAGAAGAGTTGTTGGAAGAGATTCAAGGAGAGGCAGAATTATCAGAACAAACAGAATTCTGGTCCAAGGATACTACTGAGTTTCCTGAGAATTCAGAGATTTGGTCAAAAACAAACCAGGACAATTTATCCAGTGATCATGTTGTCAGTGATGAGCCTGAAACAGATAACATAGGTGCAGAAGCTTTGACTGAGAATAATTCTTATTCTTGGGACACTGCTCAAGAAGACAATACAGAAAATACTGCAGCGGATGTGGATGAGATTGAAGAAGAATTTCCAGACAGCATTCTACTGAATGATGATGGTCTTACTCAGGATCATCTGCTACCTGGGGATGTGCGAAGTTTAGGCCAGAGTTCCAATGTCAGTGATGAGAGTTGTGAAAGACATTCACTTCAAGGTGATTCTGACACTGAGCCAATGGTTACGGCATCTGACAGAGTGTCCATTCACAGCATATCAAATATTATTGGGAGCTCAAGAATTCGATCAGTTTCTGCTGGAGAAAGTGAAACAGGATCTGCAGGTGAACCTTCAACAGCAGAATGTTCAGTATTTGATGATTCCAGTCCCAATCCTGATACATCAACCCTGTCAGGAAAACTGGATCCAAAATCATTAAAACACGATACAAATGAATCTAGTAATATATCTCCTTCAAATTCTTCACCAGTGTCCTCAAAGTGTCCTGATCTCAGTGACAAAGCAGTTACATCAGTTGACATGACAAGTCACATGGTTCGAAGTGAGACTGATGATCTAATCATGTTGAACCTCTCCACCTCCAGTCCTGCTGATATCCTCAATATACGAGACATTGCTTCTGAAAGTGTCAAATGGTTATGTTGCAAACTGGGCCCTGTTCTGACTGCCAAGTATTTCTCAAAGAATTTAATTAGAATGTTAGCTTTATGTTATTTTGGAAATGAACAGTTGGAAGTCCTTCAGATTTCAGAAAATGATTGTTTAAAATCTTCAAAACTTGTGGTTGGAGATCAGAATGCAGAGAAAATTTTGGAGTGTTTGGGACATGTTGCCTTGTTGTATGGAGAACAAGTGATTTTATTACAGTATCTGCAGTGCATTGTAGATATGGTTTCTGTCTCCCAGAGGCGACTAACACAACGATCAGAGAGTGGGCTGTTTGGAGCTTTGATATTGTTAAAATACATCATTCCATTCATTTCAGACAAAGCATTACTTGACTACATAGAGGATACTATAATTCAAAACTGCCTAATGGCTGTGATAAAACTTGTGACAAATACATCGGTTTCTTTTCCTGGCGGAAGCTATGTCCGATCCATTGTCTGTTACAAAGTCGTTGATGCTGTGTATGTTATTGGTTTAAGACTTGGTTTTGAAATGACTCGCATACATCTAAGCCAGTGTATGCAAAACCTTTTTGAAGTCTTTAGTCATGTTTATGGACATTTGACTAATGGGGATCAAAGTTCAGATATTGGAGCAGGTACATCTCCAGGTGGGGAAGGCATTACTAATTCTGAAGAATCGTACCTGACAATAAAGATGGATCCCACTTCGCAGGAGTACAAGATTGGAACCCCAGTTTACATCAGTGGTCTTAGCCCTGATCCAAATTCTTCAGTACGAAAGTCACAGAGTACTTCGAAGTTCCACAGTCTTACTTCTCTAGGAGCTATTGATGACAGAGAAGATAACCAGGAACTGAAGGCTGGCCCAAAAGAAAATGGAATGCAAGAAGTAGCATCTGTATTCACTGCTGAACTTGCTCAAGCAATATACATACCTCTCTGCAGAATATTTGGAAGTATTCACATGGAACAAAACTTGAAGAATGATGACCTTATCAGACAGCTGTGTGCTCAGCAAGACCAGTCAGTAGATCGTAAGAAAGAAACAAAGGAAACTTCAGATAACACGAATGGCAGTGGCATAAAATCAGAAGATTCCTGTACAGATAATGAAGATGAGCCTGTGACTGGGGCTATAGGGAAGAATGTGGAAATTGTTGGTAACAGAATACAGCTGACAAAAGACAGTCCAGATGTTATTGAAACACATCAGTTTGGTCGAGGGTATAAACATTCAGGAATTCTGGCAATCAATCCAGATGATGTCAAATGCTGTGAGATGGAATATATGAAACAGAGACATCTTAAAGGGAACTGGCTTGCATACTGGGAACATGAACTAGGTTTACATGAACGTGATACTCTGTTTAACTTCAAGCAAATAAAACTACAGACTTTTGTTGGTAAATATACTGGTGGTGGTTTTGGGGTAGTGTCATTCCAGTGGAATTACACAAAGCATAAGAAGTCAGTATTCTCTGTGGCATTTGTCGACAGCAGAAGACTTGTAGCTTCGTGTGATAGTACTGTGCACATTTGGGATCCATTTACTGGTGAACTCGTGGATCAGCTGGAATCAGCCAAGTATGCTCCAGTTGTAGCCCTAACTGCATTACCTGCTCCCAGCACCTTGGTTGTCACAGCAACAACCGAAGCAACATTGAGGTTTCTTGACACCAGAATTGCTAAATATGCTCATGAGTTCAGATGTACTGTGACACCAGCAGGTTTCATCCGATGTGTGACTGTCAGTCCAGATGGCAGCTGGATTGCTGTGGGGTTTGCTACTGGGGTAATATCAATACTTGAAGCAAACAGTGGACTCCTGATCAGTACATGGAAGGCCCATGAAGGTGAAATCTTGCAGATTAAAGCTTTCAGCAAAAACAAGCTGGTTTCTTCTTCATTTGATCAGACAATGAAATTATGGAAGGTAGAAGATGCCTCTTTAATATTGGTCCTTAAAGGACCCAGTGAGCCAGTTCACTGTATCTGTTTCTATAGAAATCAAATACTTAGTGCAACAACAGGCAACAAGATAGGGCTCCACACATCCATTGATGACACAGCATCCTTTTCAAGTACAAAACTGAGAACTGATACTTTTAAAGGAGTTTTGACGTCCATGGCTCTCCTTCCTATGAACAGGTCACTTCTTCTTGGTGCAGACAATGGCAGCATACGTCTCCTTTGTTAA

Transcript

CsqKR_Scaf35_13.37

Protein

CsqKR_Scaf35_13.37

MNIYLQVSQDWWKQCCQGKVKLLQALDVIQQTQAEQLLAGTCLTVPEQWKKISVKIVPKITEKVQSLRDGPLYPTECARSLIEYLATTSQENFRNQWHAAYRKFKKDHVPTELHCGEEHFVVFKKYMWRMLPDVYINLDDAASSAVLNDNKKVNKCGWYNVVPTKAFVESSSHYFLIQPSLSYSLSDIVSFSPAILNSSNAHTLFILYQILQAMKTFHENGLSIGNITMHNVMLDKNLWAYVSVPHLHSVMLSEQKINSDQKTLIADSKLIKPAKQICKSETSKKNVLLTSSPSGNHSNSQGSNHDAKKDFTKKNNIFLSRVLRHDSGGPELLTEGEQCLRNAQEFLNKCHYQQFEVHDLADVVKNWVNRQISNFKYLMILNHLAGRKMGDPNNHPVLPWIMDFTSPDGNFRDLTMSKFRLNKGDGQLDLTFSTMSLLGDDGTDIPHHVSDVLSDITYYVYKARRTPKSVLCSHVRTNWVPHEYPSSIVRLQEWTPDECIPEFFTDPNIFVSVHDDLPDLEIPGWCSSTQEFIIKHISLLESEKISESLHHWIDLTFGYKLTGNAAVKSKNVYLQLVDQHKTMTRHGVVQLFSQPHPHRLPLTSFCHPHPPKVTREILSSQLTGIGISMEDAEAKSTELSFLGSFEPLDQTRPDNATIHLPKSFQPTAELEHCEAQNNFLTRSMLANVEPAKKADAIVPEHTCIVTEDVLRFACLMCEMFLAPKLMMQDSTPSLASRYQNIKRLSSADFMELPRPLQKAASFLIHTVEINCDGANGTPIFSYPSITTLGLPPPTPTQLLQLYSGIFPFPGYFIDLHACICELKSKDFEVEYIQNSNKSVTEMTNLIKQTERQKVPLIERFLTRYQGKLDSEGLHLVLPYIEDLYNNENTTVQAAWSLFGIVSRELGFKETTSKFMPYLIKLFAGEHLTAKHAKLYSRTFLMQLIIRLGLETFLLNFSTLLVEAVSGYKDFSLPSKYYQEELLEEIQGEAELSEQTEFWSKDTTEFPENSEIWSKTNQDNLSSDHVVSDEPETDNIGAEALTENNSYSWDTAQEDNTENTAADVDEIEEEFPDSILLNDDGLTQDHLLPGDVRSLGQSSNVSDESCERHSLQGDSDTEPMVTASDRVSIHSISNIIGSSRIRSVSAGESETGSAGEPSTAECSVFDDSSPNPDTSTLSGKLDPKSLKHDTNESSNISPSNSSPVSSKCPDLSDKAVTSVDMTSHMVRSETDDLIMLNLSTSSPADILNIRDIASESVKWLCCKLGPVLTAKYFSKNLIRMLALCYFGNEQLEVLQISENDCLKSSKLVVGDQNAEKILECLGHVALLYGEQVILLQYLQCIVDMVSVSQRRLTQRSESGLFGALILLKYIIPFISDKALLDYIEDTIIQNCLMAVIKLVTNTSVSFPGGSYVRSIVCYKVVDAVYVIGLRLGFEMTRIHLSQCMQNLFEVFSHVYGHLTNGDQSSDIGAGTSPGGEGITNSEESYLTIKMDPTSQEYKIGTPVYISGLSPDPNSSVRKSQSTSKFHSLTSLGAIDDREDNQELKAGPKENGMQEVASVFTAELAQAIYIPLCRIFGSIHMEQNLKNDDLIRQLCAQQDQSVDRKKETKETSDNTNGSGIKSEDSCTDNEDEPVTGAIGKNVEIVGNRIQLTKDSPDVIETHQFGRGYKHSGILAINPDDVKCCEMEYMKQRHLKGNWLAYWEHELGLHERDTLFNFKQIKLQTFVGKYTGGGFGVVSFQWNYTKHKKSVFSVAFVDSRRLVASCDSTVHIWDPFTGELVDQLESAKYAPVVALTALPAPSTLVVTATTEATLRFLDTRIAKYAHEFRCTVTPAGFIRCVTVSPDGSWIAVGFATGVISILEANSGLLISTWKAHEGEILQIKAFSKNKLVSSSFDQTMKLWKVEDASLILVLKGPSEPVHCICFYRNQILSATTGNKIGLHTSIDDTASFSSTKLRTDTFKGVLTSMALLPMNRSLLLGADNGSIRLLC

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF02138	Beach	Beige/BEACH domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000409	Domain	BEACH domain	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR036372	Homologous_superfamily	BEACH domain superfamily	Interproscan
IPR052651	Family	WD repeat-containing protein 81	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44662	WD REPEAT-CONTAINING PROTEIN 81	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0035014	Molecular Function	phosphatidylinositol 3-kinase regulator activity	Interproscan
GO:0035973	Biological Process	aggrephagy	Interproscan
GO:0043551	Biological Process	obsolete regulation of phosphatidylinositol 3-kinase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf35_13.37 global RNA-seq network