| Gene ID | Annotation | Chromosome | Start | End | Strand |
|---|---|---|---|---|---|
| CsqKR_Scaf35_1.21 | VISUAL SYSTEM HOMEOBOX 2 | chr1 | 23440992 | 23450187 | + |
| CDS | |||||
| CsqKR_Scaf35_1.21 | |||||
| Transcript |
| CsqKR_Scaf35_1.21 |
| Protein |
| CsqKR_Scaf35_1.21 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03154 | Atrophin-1 | Atrophin-1 family | Disordered | Interproscan |
| PF03826 | OAR | OAR motif | Motif | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001356 | Domain | Homeobox domain | Interproscan |
| IPR002951 | Family | Atrophin-like | Interproscan |
| IPR003654 | Domain | OAR domain | Interproscan |
| IPR009057 | Homologous_superfamily | Homeobox-like domain superfamily | Interproscan |
| IPR023339 | Domain | CVC domain | Interproscan |
| IPR052294 | Family | Visual system homeobox transcriptional regulators | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46892 | VISUAL SYSTEM HOMEOBOX 2 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003677 | Molecular Function | DNA binding | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0006357 | Biological Process | regulation of transcription by RNA polymerase II | Interproscan |
| GO:1990837 | Molecular Function | sequence-specific double-stranded DNA binding | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
| 1. Expression trend for CsqKR_Scaf35_1.21 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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