Gene detail

Detailed information of CsqKR_Scaf349_6.20 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf349_6.20	KELCH DOMAIN-CONTAINING PROTEIN	chr1	29952962	29958485	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf349_6.20

ATGCATGAATCTTTTGTCACTTCAGCTTACATTCCTAATTTAGAGGTTCAGGAATTAATTCCAATGGATGAAGAAATTCCACCAAGGAGTGGCCATGTTGCTGCCTGCATTGGAAACAAACTTCTTGTTTGGGGAGGATATCAGGATGAAAATGAGGCAAGAGAACGCTATCTCTCAGTTAAAGATGTTTGGATATACAGTGTTGAATTTGATAAATGGTCAAAGCAGTTAACAAGTGGCCAATATCCTCCAGGCTTGTCAGGTGCCAGTAGTTGTGTATTAGATAACTACTGGTATATACTGTTTGGACACACTGTATATGGCAACACTAACAGAGTATATAGACTTAATCTACAAACATTTTGCTGGGAAACTAAAGATTATCACAGCGCAGAACCAAGTCCAAGAGACAAGACATCTGTGTGGGTTTATGAGGACAAAATTTATTGTTTTGCTGGATTTGGTCCTCCAGTTTATAAGACAGATTTTCTTAATGAATCTGGCGAATTCCTGGAAGATCCAACATTACAATGGAGCCCGCCTCGATCTTGGAACAATCAGCTTCTGGTGTTTGATCCAAAGACTTGGGAATGGTCCAACCCAAAATGTCTTGGAAGTGCACCTGTGCCCCGGGCAGCTCATGGAACTGCTATAGTAGGCTCTAACGTGTTTGTGTTTGGTGGGCGTCATGATATGAGCAGACGAAATGATCTTCACTGTCTTGATATGACCTCCTTAACTTGGAGTGGAGAGTTAAGTCCTTCTGGGGACATACCATGCGGTCGCTCCTGGCATGCATTCAAAGCTATTTCAGATGATTCCATTTTCCTTTATGGTGGATATACAACAGACCAGAAGCCACTTGCTGATGCTTGGATTTTGAATGTTAGTGCTTTGCAGTGGACCCAACTGGATATAATACCAGAACATCCACGCCTGTGGCATACCATGGATATCACATCATCCAGAGACATTGTCATATTTGGAGGCTGCAGCAATGACATTCTCAGTGCTGTTCAAAATCATCATATTAATAAAGTTCTTACCTTTAGAATGGAGCCCAAGACATTGTTGAGAAGTTCTCTAGAGGTAGTATTTTTGCACAGGGACAAAACAAAACACATGTGGAAAATGTTACCATTCTTGCTGCAGCAATGGTTGTGCCAAAGGCTTCATGCTCAAAACACCTCACCAGCCTCAGCACTTCACATAGAATGGCTAGAATCACCTGCTCTAGGGAGTTAACAAAATGAAAATAAATCTACTGCTGTTGAGAGCAGGATTTGTTTTTTTGTTGTTAAAACTTTTTCATGATGCAGAGATCTCGAATTCAGAAATTTTGTGTTCAACACTTAATTACTTTTTTCTTTAGAAATTAGTTTTGATCATAATAGTAATTAAGAGGAGTTAATGTATTAATGCATACTGTTACTATGAGGTAGAAATTAATACATTCACGCTGTTATTTATTTAGAATTTTGTTTGTAGACAAAACCCAGATGTGTTGTAAGAGCAAAATCATTAGATCAAAAGTAATGATGCGGTTCTTTGGGTTTCTCATTTACAGATAACACCTACAACAATGCAAAGTACATACATGTTTTAATGTATATTCAGATGTTTTTATATAAATGTAAATGTTTATAATTTTGACAAATCTGTGTATACAAAATTATGCTTTATTACATTTAAATACATTAATATTATTTAGGAAGATATTAAGAATACAACAGGAACTAAACACATTTTGTTTTTTGTTTATCAGAAAATGTGTGTATAATGACAACTGTTGCACTTGTATTTTTATTATATGATTTATTCATTCATCTTATGATAAACACTGTTGTATGTTCTTTTTTATGTGTCATGGAATCTTTTTTATATCCAGGTTATTCATTGTTTTTTGTATATAATTAAATGTGGTGCAACCTACTTTATTTAACATATATTTTTTTTTTTTTTTTTTTTTTTTTTTAAGTTATTATTAAGTATATTCCTGCAATATATTTTTAACATT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01344	Kelch_1	Kelch motif	Repeat	Interproscan
PF13418	Kelch_4	Galactose oxidase, central domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006652	Repeat	Kelch repeat type 1	Interproscan
IPR011043	Homologous_superfamily	Galactose oxidase/kelch, beta-propeller	Interproscan
IPR015915	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR052257	Family	Kelch domain-containing E3 ubiquitin-protein ligase complex component	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46228	KELCH DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf349_6.20 global RNA-seq network