Gene detail

Detailed information of CsqKR_Scaf300_6.55 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf300_6.55	PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN	chr8	7095980	7109696	+

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf300_6.55

ATGTACCAGGAACTGGCGATATTTCAGACTGTGACTGATATTTCTGATTGTGTCCCAGAGCCTCACGAGCAAAGACGTCGCACCTTTATTCTCTCCAATCATTTTGCCCAAAACATTGTTGGACAACCTCACAAGATTGACAATGTTGGACTTCGAGTACAGCTCATCAATCAACCTGCTGAACAAAAACCTCTTCTCCTGTACAGTGACAGGTTATTAATTAGTGGTATTAATGAATCTACTACAAAAGATTGTTTGATAAATTATCTGGAAACCAGAAGTGACTGTGACATTGCTGATAACAACATTGTGTTTGGAGACAAGAAGGGACATGCAGTTGTCATTTTTGATCAAATTCCAGACGTGGAGAAACTACAAGAAAAATGTGCTAAAAAATCACTAGAAGGATCACAACTGACAGTCAGCCAGATTCCAGTTAATCCTGTGATCATTGTGCGAGGTCTAAGTGAGAACACTGATGAAGAGACGCTGTGTAACTATTTTGAAGGGAAAGGTTCGGGGAATGTGGCAGGTGTTGAGGTTGACAAAGTGAAGATGATGTTTGATGAAGGTTACTGCCTTGTGTATTTCAAAAACTATTCAGTAATTGAACAGATCCTGACTGTAGATAAAGATAAAGGTCACAGGCTTAATGATGCTCATCTCGATGTTTCTGTTTTCTACGAATGTCTGTTTGTTGAGCGAGAAGATGACAAGTTGTTTAACAGACCAGCTCCTCTGGTGATTAAGAATCTTGATAAATCTAAAGTAAATTTTATCAAAGAATCAAAATTATCAAAACAACTACTTGAGAAAGGCTTTGATACCATAACTCTCAACTTTGACTTGGGAATTCAGCACTTTATGCAGCAGTTTTGCCAGACTGAAATAATTCAGATAATGTCAGACTTGAAAGATCTGCTGGTACAAATAGAGTATACATCTGATGGTAATGAATTTATAATAACAGCTACAAAGAAGGGAATAAGTTCAGCAGTGAAAAGACTGGGTGATTTGGCCAGTACAGTCAAACAGAAAAATCATACACACAAAAGGCCAGGAGTAACAAAAGTTCTCCAGTCACAGAGAGGAATTCAGTTTATTGCTGGTCTTGAACAAAGAGAAAGGTGCATTATTCAAGTAAAATGCAACAGCAGTACAAAAATATCTGAAGAAAAACCTCAAATGTTCCACGAAATGGTGGAGTCATCACATGTGACTGATACAAACCAACTTGAATTTGAAAATGAGAACTCAGTAGAGCATTCTGTACAAGGTGACAGTGGAGTACACACTGATGCAGGCTTGTCAGGTGATCAAAAACCAACCCGTAGAAACAGAATATTTAACCATCCATCCATGGCAACAGCTCAGTTTGGTGAATGTTGCCATGAAAGTAAAGATGTTTCTGAGTGTAAAAGAATCCTGAGTCTTGAAAATACTTATCAAGTGAAGATGATACTGCAACAGGAGATTGGACAAGTGTGCATTCAGGGATGTCACCAAGATGTTTCAGATGCATTTGATGTTGTAACCAGTATCCTGAGAGAAGCTGATCATTTTAAGAGTGAATGTGAAAAAGCTGCGATACTTTCAAACCAGGCTCAGTGGTACTTCACTGATAAAGAACAAGAAACTCTTATAAAGTATGATAAAGATGTGAATGGCACTATAGAAAAAGCACATTATGATGGCTTTCCCACAGTCAGTTTGCAAGCTGGCAGGTTTAAGTACATCATAGACTTTCAGAGCATGGAGGAATACCTTGCTGATAGCAAATATGATTCTGTGAAAGTTGTTCGTGAAAGTCTTATCAAAGATTCAAAAATGAAAACAACTGAAGTTAAATCACTTCATTATGAAGCTATGAAAAGACTGCTTAAAGAAGATCTGTTTGTTGATATAAAACTAGGACATGACAAAACTTCATCAACATTTGAAAAAGATGAAACTAGAGAGATCCAAAACAGAACTGAGGAACTGATGAGAGAAAACATCAACACAGAGACTGTCTCATTGAAGCAAGAAGAGATCAAATCAGTTGTAAAGAGTTTACAAGATTCTACACAAGATGTTTACTGTGCTTATATTCCACAACAAAACATGGTCGCAGTTTTCAGTGAAGATAGAAACATACTGGAAGAAATGAAAAGGAAACTTCAGATAAAATTGGAACTAAAAAAACCAAGAGGTCAAGCTGGTCAAATATTTACTTCTTCTAAAACTGTCAGCTCTGAACAGAAGAATCAAGCAACATCATCCATTCAGAATGTGTCAACATCCACTTCAACAACATTCAGTGTTGAGCCACTTTTCATAGGCAAACATCTTGACGTGATGGTGTACAAAGGTAATATCACTCAGCTGTCAGTTGAGGCTATTGTAAATGCTGCTAATGGTCATTTAGATCATGGAGCTGGAGTAGCAAGAGCAATAGCTGATGCAGCAGGAGATGACTTGGTTAAAGAAGGAAACAAGTTTGTTAGAGAACAAGGACAAATTGCTGTGACTGGTGTTGTTGTCACCACAGCTGGACGACTTCCCTATCACTGTGTACTTCATGCTGTAGGTCCTGCTTACTATGATTACAAGGACAAGTCAGAATGTTTGGAAGATCTCTGTAAAACAATACTGAGATGTCTGTGTGAGGCCCGCAAACAAAATGTGAAATCTGTAGCAATTCCATCCATCAGTTCAGGAATCTTTAGTGTTCCAAAGGAATCTTGTGCTGAGATGTATGTGAGAGCTGTCATGTCGTTTAACTCAGTAGTTTCTGAAGGAAGTCTGAAAGAAGTTCACTTTGTTGACATTAATGACAACATGCTGCAGTTAATCAGCAAAGAGTTTATCACAAAATGGGATACAAAACTGGATGAAGAAGTTCTGGAAAGAGATAAAAGATTTATTGAAGAACATCTGCTTGCAATAACTGATTTCCAGGATGTGTTGACAGAAATTATTGAAATATCAGATCAGGAGAAACTGCAATCTATCACTGTTCCAGTTTTTCATGCTTTCACATCAGACAGTGTCAAGAAATTTACAGAGGTACTTTGCCAGACTGTGAAAGATTTTATAGCAAATAAAGAACACTTTGACTTGAATCAGATACACATTGTTGACACTGATCAGAAAGTTGTAAGTTCTGTCAACACACTTGTTGAAAACAGTGGAGTAAACAGCTGGACTTCAAACAATCAAACTGATGTCTACAAGAATGAAAGTTCTCCATCACAACATGCACCATCCCAGCATTCAGATCATGTTAATGATGTCTGCGCAATTTGCAGGAATGAAATGTCAAATGCTCTGAAACTGAAAAAATGTGGCCATAGTTTTTGCAAAGATTGTATTGATACACAAATGAAATACAAACCTGTTTGTCCAAGCTGTGGAATGTTGTATGGTGTTCTGACTGGTGATATGCCTACAGGAGGAACCATGTGTGTTGATTTTGATAAGTGGGGACTTCCTGGATATGAAAAATGTGGATCTTATTGTATCACTTACTCGTTTCGAGGTGGAAGGCAAACTAAAGAACATCCTGATGAAGGACAGTGGTATAAGGGTATTACACGCACTGCTTATTTACCAGATACACTAAAAGGTCGCAAAATACTTGCCATGTTACGGGTTGCTTGGGAACGAAGACTGACATTTACTATTAGAAGATCAGTCAAAACTGGACGTGATGGCATTCATCATAAAATGAAGATATCATAA

Transcript

CsqKR_Scaf300_6.55

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01661	Macro	Macro domain	Domain	Interproscan
PF02825	WWE	WWE domain	Family	Interproscan
PF13923	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF18102	DTC	Deltex C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR002589	Domain	Macro domain	Interproscan
IPR004170	Domain	WWE domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR037197	Homologous_superfamily	WWE domain superfamily	Interproscan
IPR039396	Domain	Deltex, C-terminal	Interproscan
IPR039399	Homologous_superfamily	Deltex, C-terminal domain superfamily	Interproscan
IPR043472	Homologous_superfamily	Macro domain-like	Interproscan
IPR052056	Family	Mono-ADP-ribosyltransferase ARTD/PARP	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14453	PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003714	Molecular Function	transcription corepressor activity	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003950	Molecular Function	NAD+-protein poly-ADP-ribosyltransferase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0010629	Biological Process	negative regulation of gene expression	Interproscan
GO:0070212	Biological Process	protein poly-ADP-ribosylation	Interproscan
GO:0140289	Biological Process	obsolete protein mono-ADP-ribosylation	Interproscan
GO:1990404	Molecular Function	NAD+-protein ADP-ribosyltransferase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf300_6.55 global RNA-seq network