Gene detail

Detailed information of CsqKR_Scaf300_1.9 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf300_1.9	PENTATRICOPEPTIDE REPEAT DOMAIN-CONTAINING PROTEIN 3	chr8	7575593	7589758	-

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf300_1.9

ATGGCAGCCTCCATTTGTTCCTGCTGGAAAAGAGTTTTCACGTCACGATTACAGAAACCTTGCAGAACCAAATATCTGACACCTCTAACAGAGGGTTGGATCAGAGGTCTTGTCAGATATTCTTCAGTGTCAGTTTCTCAGAAAGCTTCAGAAAGTGGACAGCACAATGTATCAGGTGATGCAGAACCCATCATTATTCCTCGGCGAAAACAGCGTGATTCATTATCAATCTTGAAGGCATTGGCATCAACAGTTGGCACAGACTACAACGCACCTCACTATAAATACATTGATGATCCATATCTTATTCCAACATCTGCAGCTCAGAAGAGGAATTATGCTTTGTCCAAAGCCTCAGGGAAGAAAGCAGCACGTTACATTATTGAACATTATTCAGAATTTTTTCCTGAAGGAACTGAACAACCTATCATTGAGGCATACAGGACATCAGGTGAACAGCAGTACAAGTTTCAGGATGCCAGTGAGAACGCTTTGCTTGAGAGAATTAGCAAAAGAAAAGTGACAGATGCTAGCGAAGTTTACCAAAAGATGAAACAAAATGAAACTCCCATCTCTCAAGAAACTCAGCTGAAGTTACTAGATCTGTTGTGTGCATACAACAACGTCGACCCTCAGCCTCCTCTTCTCACAGATGAGTTTTTTTTCCGCAGAGAACTCGGAATAGAGGACAAGAGACTGATGAAAAAAGTTTGGAATGACACTGGACTGGCTGAGAGAGTTTTTGATGACATGTCTGAAAAACCAGCCAAGGCTTACAACAGCATCATCAGAGGAAGAGCAAAGTATTTGCAATGTGACAAAGCATTTGATCTTTATAACTATATGGTTGACAACAGAATACCAGTGGAAATTTCAACATACAATGCTCTGATCAGCATTTCATCTTATTTTCAAGATAGTTATGAGACAAAATGGCAGCAGGCTGTGCAACTGATGAAAGACATGAATTCTGAAGGTGTGGAACCCAACCTGGAAACATTTAACTCAGCTCTGTTCACTCTGACTCGAATTTCAAATTACAGAATGGCACCCTCTCTCGCCTGTCAGGTCCTTGCAGAAATGAAGGAATGTGGAATTGAACCTTCTCTGACAACTTGGCGACACATCATCTTCATGTTCTACAATCATGATGATATTCAGTCTCCAATGTTAAACAAAATTATTGACCATCTTCAGAATAAAGAATTTGAAGCTCAGAGTAAGGAAGATTTTGACTTTTTCTCCATGGCCATGACAAAGTGTTTTATCAACTTTCACGACTTGGACATGGCTATGAAGCTGGACAATGTTCTCAACACAGGAAACAACATCGTCCTGCTAGGAGATGCATTTAGAGAATCAATATATTATTCATTTTTCTTCCGACTAATCTGTATGTTTGAAACAATGGATACAATCATGGAGTACTATGACAAGTTTGTGCCACACATCTGGACTCCAAACTTTAAAGGTTTTATTGATCTTCTCAAAGCTGTAGAGCTTCAAGATGGATATGAGCATTTACCTCAGATTTGGTCAGATCTCACTTTGTTTGACTACATAAAAAAGGATGCTGTTATTGGACCCCTGCTTTCACTGATGGCAAAGAAACCACAGCCTGAAGAGTTACAGAAGAAGTTTGGAGAAATTGCTGAATACATTATAAAGACATGGCAGGATGACCAGGATGATGATAGGAGAAATGCAATGGAATTGTCTGGGGATGCTATTGGTGATCTTATAATTGTAGCTTTGAATGCAAACAAATCTGACCTTGCCTGGAATATTTTTCTGAAGTACAAGGAACATGGACGACTGTTTTCTGGAATAATCAGTGAGAAATCTTTGGTGAAACTAGTGGAATACTGCATAAAGGAAGGAGACATTGAGAAAGCTATAGCTGTTCTCACCATCATGAATGATTTGTTGTTTGTCAGTGTTCCTCAGTTGAGGGAAAAAGTACAGACCGAGATGGTACTAACAGACAGACAGAAGGAACAACTGGCTGTTGTAACAAGATAA

Transcript

CsqKR_Scaf300_1.9

GTATAAGTGTAAGGGAGGAAATTACCTCTACTGATAGAGATAAAATGGCAGCCTCCATTTGTTCCTGCTGGAAAAGAGTTTTCACGTCACGATTACAGAAACCTTGCAGAACCAAATATCTGACACCTCTAACAGAGGGTTGGATCAGAGGTCTTGTCAGATATTCTTCAGTGTCAGTTTCTCAGAAAGCTTCAGAAAGTGGACAGCACAATGTATCAGGTGATGCAGAACCCATCATTATTCCTCGGCGAAAACAGCGTGATTCATTATCAATCTTGAAGGCATTGGCATCAACAGTTGGCACAGACTACAACGCACCTCACTATAAATACATTGATGATCCATATCTTATTCCAACATCTGCAGCTCAGAAGAGGAATTATGCTTTGTCCAAAGCCTCAGGGAAGAAAGCAGCACGTTACATTATTGAACATTATTCAGAATTTTTTCCTGAAGGAACTGAACAACCTATCATTGAGGCATACAGGACATCAGGTGAACAGCAGTACAAGTTTCAGGATGCCAGTGAGAACGCTTTGCTTGAGAGAATTAGCAAAAGAAAAGTGACAGATGCTAGCGAAGTTTACCAAAAGATGAAACAAAATGAAACTCCCATCTCTCAAGAAACTCAGCTGAAGTTACTAGATCTGTTGTGTGCATACAACAACGTCGACCCTCAGCCTCCTCTTCTCACAGATGAGTTTTTTTTCCGCAGAGAACTCGGAATAGAGGACAAGAGACTGATGAAAAAAGTTTGGAATGACACTGGACTGGCTGAGAGAGTTTTTGATGACATGTCTGAAAAACCAGCCAAGGCTTACAACAGCATCATCAGAGGAAGAGCAAAGTATTTGCAATGTGACAAAGCATTTGATCTTTATAACTATATGGTTGACAACAGAATACCAGTGGAAATTTCAACATACAATGCTCTGATCAGCATTTCATCTTATTTTCAAGATAGTTATGAGACAAAATGGCAGCAGGCTGTGCAACTGATGAAAGACATGAATTCTGAAGGTGTGGAACCCAACCTGGAAACATTTAACTCAGCTCTGTTCACTCTGACTCGAATTTCAAATTACAGAATGGCACCCTCTCTCGCCTGTCAGGTCCTTGCAGAAATGAAGGAATGTGGAATTGAACCTTCTCTGACAACTTGGCGACACATCATCTTCATGTTCTACAATCATGATGATATTCAGTCTCCAATGTTAAACAAAATTATTGACCATCTTCAGAATAAAGAATTTGAAGCTCAGAGTAAGGAAGATTTTGACTTTTTCTCCATGGCCATGACAAAGTGTTTTATCAACTTTCACGACTTGGACATGGCTATGAAGCTGGACAATGTTCTCAACACAGGAAACAACATCGTCCTGCTAGGAGATGCATTTAGAGAATCAATATATTATTCATTTTTCTTCCGACTAATCTGTATGTTTGAAACAATGGATACAATCATGGAGTACTATGACAAGTTTGTGCCACACATCTGGACTCCAAACTTTAAAGGTTTTATTGATCTTCTCAAAGCTGTAGAGCTTCAAGATGGATATGAGCATTTACCTCAGATTTGGTCAGATCTCACTTTGTTTGACTACATAAAAAAGGATGCTGTTATTGGACCCCTGCTTTCACTGATGGCAAAGAAACCACAGCCTGAAGAGTTACAGAAGAAGTTTGGAGAAATTGCTGAATACATTATAAAGACATGGCAGGATGACCAGGATGATGATAGGAGAAATGCAATGGAATTGTCTGGGGATGCTATTGGTGATCTTATAATTGTAGCTTTGAATGCAAACAAATCTGACCTTGCCTGGAATATTTTTCTGAAGTACAAGGAACATGGACGACTGTTTTCTGGAATAATCAGTGAGAAATCTTTGGTGAAACTAGTGGAATACTGCATAAAGGAAGGAGACATTGAGAAAGCTATAGCTGTTCTCACCATCATGAATGATTTGTTGTTTGTCAGTGTTCCTCAGTTGAGGGAAAAAGTACAGACCGAGATGGTACTAACAGACAGACAGAAGGAACAACTGGCTGTTGTAACAAGATAAGCAGTATCAGTATCAGTTCACTGTTGAAAGAAAATGTCCCTGTCCACACACTGTGACAAGAACCTGGATTATATCATGAAAATAACCACAGACTGTTTCTGTTTTAGAAAATGAAAAAAAAAAGAAAAAGAAAAGAACATATTTCACAATGAAAATTAATTGTAGACAACTAGGATTTGTGAAGATAAAAATATAAATTAAAAATTTTGATCCAAGTAACTAAAAGATGCATTTAGATTTTGTTTTTTGTGGGTTTTTTAATACAGAATATCAAGTGAAAGTGAAACTTGTATAATGAATATACATTTTGTTTAAAAACAACAATTATCACATTTCGTACTAGTGTTTAATATACATCTTATTAAATAATTGTAATATCTAAATAAAACATATATAATCTGATTAAATCTGAGTTAATTATTTTAATCCAGATTACAAAGCATATTCTTTATAAAAAAAGAAAAAGATGAGATTTTAATAATGTCTGAAATAAAAAGCATAGATATATATAATATACATATATTTTATGAGACGTGTAGTAGATGGTAATTCTATACAAACATAAGTAAAAAATATATATGAAAAATATCCCATCTAATGGATCTTAATGAAATCACAGAATATCATGTCTTAAACTGTAAGGACTGAATCACTGCTTTTGAAACAAGAATACTCAGGTATACTAAGTATGAAATATAATACATTTCTTACACTGAAATTAACAAAGTAAGATAAAACATCTATTAATATTTTTGATTCTCAAATTTTAGACTCGAGTAGTTTGAATCTGTAAATCCAGTAATTGTTCAGCATATTTCTTGGCATCTTCCGTTCCCTCGCAACACGCCTGCCAGGATTTTGGAATAGCTTCTAGTCCATAGAAAGCTCCCGCAGTGGCCCCAGCCATTGTTGCTATGGTATCAGTGTCACCTCCCATGTGAATGGCATAGATTATAGTC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17177	PPR_long	Pentacotripeptide-repeat region of PRORP	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR033443	Domain	Pentacotripeptide-repeat region of PRORP	Interproscan
IPR037387	Family	Pentatricopeptide repeat domain-containing protein 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16276	PENTATRICOPEPTIDE REPEAT DOMAIN-CONTAINING PROTEIN 3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0019843	Molecular Function	rRNA binding	Interproscan
GO:0032543	Biological Process	mitochondrial translation	Interproscan
GO:0043024	Molecular Function	ribosomal small subunit binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf300_1.9 global RNA-seq network