Detailed information of CsqKR_Scaf29_5.8 in Chrysomallon squamiferum Gene info
Gene IDAnnotationChromosomeStartEndStrand
CsqKR_Scaf29_5.8TRANSCRIPTION INTERMEDIARY FACTORchr1189303978956407+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
Transcription Factors FamilyMBD
Ubiquitin FamilyE3|E3 activity RING|PHD

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00439BromodomainBromodomainDomainInterproscan
PF00628PHDPHD-fingerDomainInterproscan
PF01429MBDMethyl-CpG binding domainDomainInterproscan
PF02791DDTDDT domainFamilyInterproscan
PF15613WSDWilliams-Beuren syndrome DDT (WSD), D-TOX E motifFamilyInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001487DomainBromodomainInterproscan
IPR001739DomainMethyl-CpG DNA bindingInterproscan
IPR001965DomainZinc finger, PHD-typeInterproscan
IPR011011Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR016177Homologous_superfamilyDNA-binding domain superfamilyInterproscan
IPR018501DomainDDT domainInterproscan
IPR019787DomainZinc finger, PHD-fingerInterproscan
IPR028941DomainWHIM2 domainInterproscan
IPR036427Homologous_superfamilyBromodomain-like superfamilyInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR45915TRANSCRIPTION INTERMEDIARY FACTORInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000790Cellular ComponentchromatinInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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Expression pattern
 1. Expression trend for CsqKR_Scaf29_5.8 global RNA-seq network
TOP