Detailed information of CsqKR_Scaf287_2.32 in Chrysomallon squamiferum Gene info
Gene IDAnnotationChromosomeStartEndStrand
CsqKR_Scaf287_2.32NUCLEOSOME-REMODELING FACTOR SUBUNIT BPTFchr15228582240121+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|PHD

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00439BromodomainBromodomainDomainInterproscan
PF00628PHDPHD-fingerDomainInterproscan
PF04110APG12Ubiquitin-like autophagy protein Apg12 DomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001487DomainBromodomainInterproscan
IPR001965DomainZinc finger, PHD-typeInterproscan
IPR007242FamilyUbiquitin-like protein Atg12Interproscan
IPR011011Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR019787DomainZinc finger, PHD-fingerInterproscan
IPR029071Homologous_superfamilyUbiquitin-like domain superfamilyInterproscan
IPR036427Homologous_superfamilyBromodomain-like superfamilyInterproscan
IPR038028FamilyNucleosome-remodeling factor subunit BPTFInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR45975NUCLEOSOME-REMODELING FACTOR SUBUNIT BPTFInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000045Biological Processautophagosome assemblyInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0016589Cellular ComponentNURF complexInterproscan
GO:0035064Molecular Functionmethylated histone bindingInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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Expression pattern
 1. Expression trend for CsqKR_Scaf287_2.32 global RNA-seq network
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