Gene detail

Detailed information of CsqKR_Scaf286_5.16 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf286_5.16	UNCHARACTERIZED	chr15	4526719	4547342	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf286_5.16

TTCTGTCCCTATCTATGTTCATAGTTTATTTTCTCAGTATTTATCAGTCACTGGAGTGAATCACAAGTGGGAACGTCATCGTAAATACATTTACTTAGTTATAAACTGATCCTGTTTTCTCACTACAGAAACGTCTGGGCTGTTTCAGGCTTCATCCTGGGAATTCTTACAGAACAAACTGACACAAAACAAAGCTCCCACTGACAGCTTATAAAACGACTGCTCATGGATGCATGAATGTGATTTATGTGAATATTGTATATTTTGTATATGCGAATGCACGTAAGAAACAGATGAAATAAATAAGGAGATAGAGAAGTCAATTGAAAATTCAGTAATAATTAATTCAAGAAAAAACATACACAAATTAACCAAACAACTAACTAAATGGATGAATTAATGGATAGGTAGATGAATGAATGAATAAATAAATATATAAATAAAAAAGAGAAATAAAACGAAGAAAATAATAATATTAATAACAACAACAATAACAACAGTACAAAATATTATTTGACTTTCGTTTATAATGTTTAATTTATCATGGAGTTGTGTTTGTCTTTAGTTAGCTGGTATTTACATTGTGGATTTGAAGAATGTCATTATATTAGTAATAATGAATACATTTTATTTAAAATGATAATTTGTAATAGATTGCGTTTGGAATTATTTCGTTGGTGCGTTGTGAAATGGAGGAAATAATACTTCTACTTTATGTTACGCCTTATCTATAATAACTAACAACTGTAATTCAGTCTACAGAAACCGAATTGACATGAAAATGGATCGGTTTGTTTTGATTTTCTGTTTTATTTAATACAGGTTCGGAATATACAAACAGAAACGAAAACAGTGCGCTCTGTATCGTACAGAAAAACAGTTCACCATTAAATCTGCCGTGAGCATTTGTGAATATTCATTTTCATCATGCATGAAGGTTTTGGAAAATACAGAAGCTCAGATCGAGACGAGCCTGCCAGACATGAAGCAGAATCAAGTCATGCAGGAAATTCGAGTGACGGAAGAAGCGAAGGAACGCAAAATCTCGCCAGAAGAGGTTCAGATTTGGATAGTGACTTTTTGTGTAGCTGCTGCTACGAGATGATGGTGCAGCCGACAACGTTGGTGTGTGGTCACAGCTTCTGTCGCCTGTGTCTCGCGCAGTGGTTCCTTACGTCAAAGAAGAAAGAGTGTCCCACCTGCAGGCAGCAGTGGCAAGGTCATCCCAAAGTGAACATCACACTGAGAAATATGATGGAGAGGATGCTGGGCAGTCGAGTGCAAGAGATGGAGGAAGCGATGAAGACCAATCCAGACTCTCAGTCAAAGATAGAACAGTTTGACAAACAGCTGGCCTCATCCCGTAAATCTGAAACTGACCTCACATCTTTCTGTTCAGGCATCTGCATCACACTGTGTGTCATTATAGTTGCCTACTTGGCGTGGTACTGGAGGAACAGCGATGAAGATCTGCTCATTCACAAACCGGTGACTCGGTGGAAGGTAGGGGACGTGGAACAGTGGCTGAGAGAGATGGGCTGGGCCAGCGAATACATTCCTGCTGTGCACTCGAATCATGTTGATGGTAACATGCTTTTAGCACTGGATGAGAAGAGTTTACACGAGATACTGAGTGTTGATAATGAGCTTCACCAGAGAGCTCTGCTCAATGCCATAAGAGAAGTGCAAGTGAAGGGAATGAAGATGCCAGGAACACTGTGGGAGTATAAAGCTCAGTATCCTGGCCGGACTTTGTTTCTGCTGTTCGGACTAAAGGACTTTCCACGGACCACACTGTTGTATTTATATTTCTTTAACTACGAGGAGGTTTTTCTACCTTTCCTACACCTGTCCATCCCACAGAGAAAACCTGGTGAACCACTCAACTGGTCGGAGATTTCGGCTCCCAACTCGGAACAGTGGATTCTGTTTCTGACCTACTTTGTTCTGTTGCCGTACTGGCTGGTCATCAAGGTGGCCTGGTCCTACACTGGCCTCCACTACTGGACATCCTGGTTCATCATCATCAGCTGTTCTGCTCTGACAGTGTCCGAGGCTTCAATGATCAAGACGTTTGTAATCTCTGGACAGTGGAGGCAGTCAGTGTCGCTGCTCAAACAACACTTGAAGCAGCTGCTGTCCATGAGCATCTTTGTCGTCATCTGGCCTATCGTACCTCGACTCATCTGTGATTTCTTCTTCTATGCAACTCTCTACTTCTCCCCAATACAGCTGATGAGAAGCTTTTACACCAACCATATCTTGAGACATTAACCATTGTCCACAGAGTGAACTGTGCTGAATGTCTGAGCGATTTTACTTATCTTCTTTTTAAAACAGTTTTCTTTTAATCTTTGTGTGTTTGTCTGCAAGTGTGTGTGTGTGTGTGTGTAGAGAGAGAGACACATTTAAAGTAAAACATATATATATATATATATACATGTATATACAGTTATATAGTG

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING
Ubiquitin Family	E3\|E3 activity RING\|U-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00097	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF00536	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001660	Domain	Sterile alpha motif domain	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR013761	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR018957	Domain	Zinc finger, C3HC4 RING-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15898	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf286_5.16 global RNA-seq network