Gene detail

Detailed information of CsqKR_Scaf285_4.40 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf285_4.40	PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 35	chr10	9893082	9896926	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf285_4.40

TATGTTTGAGATAGAATCATGGCGGCCAAAACAAACCTTTTGTGTACAGTCTGATATATCTTTCTGCAGGCTGTATTATATTAATACATGGTATTATTAAATTCCAAAGTTTTTAAACAACAACAATAATAATAATAACACTGGACTGTTGAAAATCACAATGCATTCTGCCTGTGCTGCCAGCAGAGAGCCTGTTTCTCACTGCATCCCACCTGCACTGCCATCTTCCCGTGAACATGGAATGGTTTCTGAGTATGCTTGTTTTAATCTTCCTCATAAGAAATATTCTGAATTTTATCCTGAAGAAACACTGGAAGATGAAGTTGTCCCCCTTTGTAAAGCCCCATCACCATGGAAGCCTCCTCTGCCACCAGGAACTCTTTCTGATCCAACCCTGTGTGTAAGTCCAGAAAAATCACGAGATTCAGTTTCCAAGAATACTTTACCAATCAGAAGTGCCCCTCAGAAAGCATCAAAACCTACATTACAAGGTGTGTATCACTCAGACCCATCATTAGCCCTGACCCCAGACCAGCCATGCAAATCAGCAGCAAGACAGAGAGAAAAAGAGAGAAAAAGTAAAGGTGTTTTTAAAAGTAATCTTGGTAAAACAAACTGTTCTGATAGTACAAAGTTAAAACAGAAAGTTAGGTTTGATATTGATTCTTCATATGACTCAGACTTGAATCAAGATAATCAGGACTCAGGTGTTTCTAAACAAAATACTTCTCCAAGCAAACAGTACAAGCCTTCATTGTATTCTGATGCAGGTGATGCTAATAACACGTTTGATTTCTTAGAGCAACCTAGAACAATAAAATATGTTATTTCTGAAACAAGTGAGACAGACTCAAAAAAGATTGATAGTAATGTTAAAGGAGACACCGTTGTTAACAGTTTTTATAATGGTGATTTTCAGATTAGTGATGTAACAGCTGAAGATATCACTAGTCCAGATGAAAATGTCAAATCAAAAACATATACATACAGAACAGTACCTAGATGTGAAACAAGCAAAAATAATGCACCAGCAGTTTCATTACCATCTTGTTTTGAAACTAAACCAAAACGAAAAGTTATTGTTACTAGAGAATTTGAAGAAAGACCAAAGATTGAGAATTACCACTTTCCATTCTCTGGCTCCATTGTCACTGTGGACAGTGAGTATGAACATGTGTTTGTGAGACCAGAATACAACAGTACACTGAAACAAGTGAATGAACTACAAGAAATGAGAGAATGTCATCCAGATGTCAGGTGTGTCTTACAGAAAACTCTAACTGAATCAGAACAGATTAAAACTGCAATTCAGGAAAAGGCATCCTCTAAAGTGAATGTTCCCACTAATCAGTTGTCTGGACTGGTCAGCGTTCAGTCACAAGCTGATGAGATTAATCAACTGGAGAAAGAAATCACAGAGAAAGCAATGATTGTCAAACAGAAAGTAGCATCCAAACCAAAGCCTAAAAAGAGTGAAAGAGAGCCAGATTTGCTTGAGTTCTTCACCCCTGATCTACAGAGAGAGCTTCCAGACTTCACTCTGACATCACTGACCACACCTTTCGCTCATCTGACAACAGCATCGCATGATTCAGCATTTGACCTGTATCGTCACAACCGCGTATGGGAGGGTATTGCTCAGAAGTGACGAATTTCATCACATATATTGAAATGTATGTTGGAATTTTCCAGACCAAAATAAACATTGGTACTAAAACTTACTTGGACTTTAGAAATGGCATAAATAAATTGTTACTACCAAGAGACTGTTTTAAGCATTAATGGTGATGAGCTTTTGCTAACAATAAAATATAATATTAAACTATCACACTTACATTGAATTATTTCCCTTTAACTTGATATAGTTAAATTTTTTATAATTATTTAAAAACAATCTTATTGATATTCACAAGCTTTTTTCTTCTTTTTTTTTAATAAATATTTATATTAAAAATGACAAAATGAAAAGAAAAGCATTTGTCTCAGAAATGTATATTATTATCATGCTTTATTAGTAATAGAAGTTTATCACCTGAAGTAAATGGAATAATAACCTGGTAGTATGCAGTGTATTTTGTCACTGATACACAGAAATGTACATTTCAATTATACTAAAAAACTACAACTGTTTAACAAATACATTTACTTAATTTCCTAATTGTTCTTATAATGAAATAACTATATAAAATAAAATATCTGGACTAAGAAAGTATTATTTAGTTTTATGAATAGTGTTGTAAGCAATTGCAGTTTACTTGTTATATCAATAACAGTGATTTTATTTAAATTAGGTATTAAATTTAAGTAACTAGAATTATAATTAGCTGTATATTTATTTTGTTAAAAGATTATTTTAAGTTTTATTATGAATGATCATTATCCTTAACTGTTGTCACTGATTTAGTTTTGTTTCTATAATTAGAACTAAATAATTTATTATCATGGTATTTTAAAACAAATTTATAATCGTATAAATATGTATTTTCTTTCAAAATTCATAATAATTTATATAATAAAAAATGTATTGCAGTTTTTTGTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15503	PPP1R35_C	Protein phosphatase 1 regulatory subunit 35 C-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029135	Domain	Protein phosphatase 1 regulatory subunit 35, C-terminal	Interproscan
IPR033590	Family	Protein phosphatase 1 regulatory subunit 35	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28625	PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 35	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005814	Cellular Component	centriole	Interproscan
GO:0010923	Biological Process	negative regulation of phosphatase activity	Interproscan
GO:0019902	Molecular Function	phosphatase binding	Interproscan
GO:0045724	Biological Process	positive regulation of cilium assembly	Interproscan
GO:1903724	Biological Process	positive regulation of centriole elongation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf285_4.40 global RNA-seq network