Gene detail

Detailed information of CsqKR_Scaf27_9.34 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf27_9.34	TONSOKU-LIKE PROTEIN	chr3	3268789	3274617	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf27_9.34

ATGACAACAAAACCAACCACATCAGAAATTGACCCTCTGCTATCTGAAGACAAAATAGTTGGTGACGACTGGCTTGTGGAAGATGTCAGACCAACGACAAAACGAAAAAGAGTGGATCTCGATGGACTGTTTTCAAAAGATGGGCTTAGAAATGTGGATCACAATGAAGTTAAGAGAAGAAGAAGAATATCGTCTACTTGTGATGACTCCTCTTCAGAAACGAAAACTGAAAACCACTGTGAGATAGAAAACTATGATTCAGATTCGGGTATTTTTCAAAATGAACAGCGAGCAAACTGTTTGGACTCTGATTCTGAAGCAACTGTCAATTCTGATTCTTCAGAAAGTCTGCCAAGACTCTTGCAGAAGAAAACATTGAAACAGAAAAAAAAGAAACAGTTAAAACTTACCAGTTTTGCCACAACTGAGAAAAGAAATTTCTCTAGTGCAGATAGCAGTTTGAACCATCCTATTCAGACTGAGCCAGCTGAAAATTTTGTTCCAGGAACCCAACCTGCTGGGTCAGGATGTCTAATGAGGTTAAGGGTCAAGGTTCTTGAGAAAACATTTTTGATACCTGTCCCACAAAGTGAAGACACAAAAACTGTGTCGTGGCTGTGTCAGGAAGCATCATACAGATACTACAACCAGTTTGGAAGACGACCACTGTTGACACTTGAGTACAAAAGATGCTGGGATTTGCCTCCACTTAAAGAAAGATATTCTCAGGCTTGTAAAGCTCTCAAATCAGTATACTACAGAAACATAGGGGTTAAACTTGAGGTGTGTGATGACTGTGGTAAACTGGTTTTGTCGGATCTTGCTCTGAGACCTTCTCATGTCCTGCCAATATTTCGAGCTCTTCAAGGACAGACAAATCTTAGAGAGTTAAATTTGAAAGGAAATCGTCTTATGGATACTGGTGTAGAAAATCTCTGTAAAGTTCTTTCTGCTGTACCAGGTCTAAAAGACCTTGACCTTGCTTGCAATGGAATAACCAGCATTGGTTTGAAATATCTTTCTGATTCACTGGAAACAAGAGAAGGTTCACCAAAACCTTTACAGCTTCTCTCAAATCTTAATCTGAGCAATAACCCACTAGAAGACAACTCAGTTGAAAGTTTTGTTCAGATAATTAGCAGTTTGCCATCTCTGATGTCACTTAGTGTTTCCAGCTGTAAACTGACAGCTAAACTCTTTTCAAACCACAGAATAGCTCTTTCACAAGCTCTTAAAGCTTCTCAGCTGAATTCTTTCGATGTTTCTCACAACAAGTTTGGTTCACTGGGTCTGGAGATGTTGTTGAAATGTTTGAACTCAAAGACTGTGTCAGTTTTAAATCTGTCTTACATTCACACCGGTTTTAATATTAGTCACCTTAGTCTACATCTACAGCAGTACATCTCACAGGAAGGTTGCCATCTTGAAGAACTTAATTTATCAGGAAATCATCTAAGTGTAGATGATATTTATTTTATTGTAAGAATACCCTCATTGCTCAAAAACTTAAAAAAGCTGTGCCTCTCGGTCAATCCTAAAGTGGACAACTGGACAGTAGAAGAAATTTTACAGCAGAGTGTAACACACGAGTGTTGTCTAGAAACTCTGACTGTGGAAGGCTGCGGGATCAAATCACCTCTCAACTCTGGTTTCCTCGACGCCATTAATGAAAAACTCTGTTGTGGGTTTCCTCTCTGTTGTCTCAGTTTCACCTGTGAAGGTTTAGACAAAGTTGATACAGACAGCTTGAAACAGATTTGGAACGAGCGATGGAAAGAAGCAGCAGATATTCGTTTTAGTGGAAACCATGTTTTTCTTTCTATTTTGGATAATATGGCAGATGATTAAAATAAATACTTAACAGTTAAGAAGACTGATTCAAGATGGATTCTGTTTTGAAAAGGCATCATGAGGCTTGAGACCTAGAATTGTGCATTTGTTTATGTATTTTTTAAATACATTTTTTTGTTCATCACTGAAATTGTTCTGTATTTTTACAAATGGCAGTTTTTTGTCAAATATTAAATCAGTAGTGGTGATTCCGAATATGGAAAAAAATAATACCCCAAAAATAAATAAACAAATTATAAGTTAAATATAAATTATAATAATAAAAGGGAATATTTTAAATGATAATAATTTTGTTTTTATCTCAGAGAATATATTTTGACTAAGCCATGCAATTATGTTGTTGTATGCAGATCAGTGATAAAAAAGAATCAAGTTTTTAAATAAAATTTCCTCCAGATTCCTACAGTAAGCAAACAAATTTTACTAGTCTTACAGTTTCTTGCTGGGAATTAATACATTTTGTCTCTAATAAATAAATGAAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR052311	Family	MMS22L-TONSL complex component	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46358	TONSOKU-LIKE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0031297	Biological Process	replication fork processing	Interproscan
GO:0043596	Cellular Component	nuclear replication fork	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf27_9.34 global RNA-seq network