Gene detail

Detailed information of CsqKR_Scaf27_5.39 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf27_5.39	GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE	chr3	3705984	3712216	+

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf27_5.39

ATGAGGCTTGTGTCAACTTTGTTAGGCAGGGCAGCACGTCTGTACAGAACAAATTGGTGGCTGCTGTCACGCAAGTCAGGTTTTCTGCATTATCAAGTGGCAGTCTGTAGCTCATCAACTAACGCTGAGAAACCACGGCGACGCGAGTTGTTACTGGAAACAGTGAAAAGTGTTCAGATTGACAGTGATAAACGACAGGCTGAACTTGTCATATTCGACAAAGATGGGACACTTATCTGCTTCCACACAATGTGGGTTCCATGGACCCAACAAGTTGCCGCCAAAATTGCAGGAAAAAGTGGCTTGGACATTGAGGAGAAGATCTTTGAGACTCTTGGATTTTGCCAGGACACTAAACGGGTATTTCCAGGACTCCTTGCTGAATCAACCGGACCTCAGATCAAGGATGTTCTCACAGAGGTTCTTGTCGAAGAGGGAATGGAAAAAAGCCTGGCAAGAAAAACCATTGAGGAGAGTTGCAGCGAGGGAGACACGAGTCATCCAGACAAACTGAAAGCAATTTCTGACGTGAGAATGTTGTTCAGAATCCTCAAGGCAGAGAATATTAAAATAGCAATTTGCACTTCAGACAACAGAAAAGGAACGTTGGCTACTCTAGAAAAGCTTAAACTCTGCGAGTACATTGACTATATTGTGTGTGGGGACGATCCAAACACGCTTCCAAAACCAGACCCTCACAATGCTTGGAAGATCTGTGGCGATCTTAATGTCGATCCACAACATGCTGCCATGGTTGGTGATACTCAAGCTGATGTTGGAATGGGATATAATGCTAAACTGGGCTGGAGTATTGGTGTACTTAGTGGTATAGGCGACACTGAAGATCTGATGCCGGAAGCAGACCATGTTGTGAAGGATGTCAAGGACATCCTGCCACTAATCCTTGCTGATGACAGATGGAAGGATTACTATGCATATTTCAAGGATGATCGTGTTTTAGTTGAACCGCTCCAGTTTGATGAGAATGACTTGGTTGCCAAGGACAACAAACTGAAGAATGTATCAGCTGTTATTGTTGATTTGAATGGAACACTTCTGTGCATGCACCGCAGATACACAGACTGGATGGAAAAACTTTGCACAAGACTGGAAACCATGACAGGTCTGAAACTGATACAAAAGGTTCACACAGTACTTGGTGCATGTCAAGACTCAAAAAAGATCAAGAGTGGTCTTATAGCAGAGGGTCGACAACACCAACTGAAGTCAGCTCTGGTGGAACTTCTCATATCAGAAGGAATGTTCTATGAGGAAGCCATCCTGGTCGTCAACCAAGCGTGGCAGGAATGTAACTCAATTCTCCAGGACTCACCGCTCGTGCTGGATAAAGATGTGAAGAAATTCTTCAAAACGCTGAAAAGAAGTGGAGTGAAAATTGCAGTCTGCACAGAGGACTTGAGAGAAAATGCTGTCAAAGGTCTTCTCCAGCTGGACGTCCTGAGGTATGTGGACATGATGGTTTGTGGCGATGACCCTCACAGCGAGCCAAAACCATCTGCTCACAACGCCTTGCTTATCTGTGACCAGCTTGGCGTGAAGCCCTCGGACACCATTGTCATAGGCGACACTGTCTCTGATCTTCACATGGGAGAACTGGCTCATGTGAAGGCAAAGTTTGGAGTTTTAACTGGAGTAGGATCTCAATCAGAACTCAAACCCTACGCTGATCATGTTGTCGCCACCATCAGTGACGTCCTTCCACATATTATGCAGAATGACAACGATGTGAAACCAGCAGAAGACAAAGATACTGGACTGATGGGTAATAAAGTAGGTAGCTTAGGTGTGATAAATCGATCTTATTTTTATCATAGTGTTAGAGCTTTCTCTACTTCCAGTAGATCAAACGTTAGAATTACTAATGATGTTCCAGTATATGACTATGTTATTGTGGGAGCTGGGTCTGCAGGCTGTGTTCTTGCAAACAGACTGAGCAAAGATCCCCAGAATAAAGTTCTGGTTTTAGAGGCAGGACCTGCAGATACGACTTGGAAAATAGACATGCCAGCTGCTCTAATGTACAACTTGTGTGATGATAAATATAACTGGTATTATCACACACAGCCTGAGAAAGGCATGAACAATCGGGTCATGTACTGGCCCAGGGGCAGAGTTTTGGGTGGGTCTTCATCTCTAAATGCAATGGTTTACATTCGAGGTCATGCTTTTGATTATGATCGCTGGGTGAAGGAGGGAGCTTTGGGTTGGTCTTATGCAGAAGTACTTCCTTACTTTAAAAAGTCACAAACTCATGAGCTGGGTCCAGATGAATATCAGGGAGGATCTGGACCTCTGCATGTTAGTAGGGGAAAAACAGGCAATCCCTTGTTCCAGGCATTTATTGATGCAGGAATGCAGGCAGGCTACCCTTTTACTGAGGATATGAATGGTTATCAGCAGGAAGGGGTGGGGTGGATGGACATGACCATCTACAAAGGCAAACGATGGAGTGCTTCCGATGCATACTTGAAACCAGTTCTGTATCGTACGAACCTGGAGGTTTTGACCAAAGCCTTCACCCAAAGACTGATCTTTGACAAAAACAGAGTTGTTGGTTTGAGGTTTGAACACAAGGATGAAGTAAAAGAGGTCAGAGCCAGTAAAGAAGTTATCCTCAGTGGTGGTGCTATCAATTCTCCACAGCTTCTGATGCTGTCTGGCATTGGTAATGCAGATGATTTGAAGGCTTTGGATATCACACCAGTAGCTCATCTTCCAGGAGTGGGCAGCAATCTGCAGGACCACCTTGAAGTATACATTCAGCAGGCTTGCACAAAACCTATCACTTTATATTCAGCTCAGTGGAAGTTCCCACACAACATGGTCAGGATTGGTCTTGAGTGGTTCCTTCATTCAACTGGCCCTGCAGCCTCTGCTCACTTAGAGGCTGGTGGCTTCATTCGGAGTCGAGCTGGAGTCCCTCATCCAGACATCCAGTGGCACTTCCTTCCATCGACTGTAAATGACCATGGCAGGAAACCAGGATCGTGTCACGCATTCCAAGTGCATGTTGGGACAATGAGACCCACCAGCAGAGGCCATCTCAAGCTGAAATCTGCAAATCCTCACGAACACCCAACAATCGTTGCCAACTACCTTACTACAGAAGAGGATGTTGTTGACATGAGAGCGTGCGTCAGGCTGTCCAGAGAAATATTTGCACAGAAGGCATTTGATCCTTTCAGAGGGAAAGAGATAACCCCCGGGTCTGAAATAACCACTGATGCTCAGATTGATGACTTCATCCGCAGACGGTCAGATAGTGCCTACCATCCTTCCTGCACTTGTAAAATGGGTAGCCGCGACGATCGCATGGCTGTTGTTGATGCACAGACGAAGGTCATTGGTGTTGAAGGGTTACGTGTAGTTGATGCCTCCATCATGCCCAGTGGTGTCAGTGGAAATCTAAATGGACCGACCATCATGGTGGCTGAGAAGGCAGCCGACATCATTTTGGGAAATCCCCCATTGCCAAAATCCAGTGCTCCTGTTTATTCCCCAAAATCACTGGATACTCAGCGATAG

Transcript

CsqKR_Scaf27_5.39

GGGGGTGCCAGCGTGCAAAAGCCAAAGGATTACTACAAAAGCTAATTTGGACGTGGGAACAGTAGATAAGAAAACGTTGCTGCTGTCGTTGAAAATCAGTTTTGTAATGTCTCTAGAAGTACTGTGAAAATTTAAGGTTCAACATGAGGCTTGTGTCAACTTTGTTAGGCAGGGCAGCACGTCTGTACAGAACAAATTGGTGGCTGCTGTCACGCAAGTCAGGTTTTCTGCATTATCAAGTGGCAGTCTGTAGCTCATCAACTAACGCTGAGAAACCACGGCGACGCGAGTTGTTACTGGAAACAGTGAAAAGTGTTCAGATTGACAGTGATAAACGACAGGCTGAACTTGTCATATTCGACAAAGATGGGACACTTATCTGCTTCCACACAATGTGGGTTCCATGGACCCAACAAGTTGCCGCCAAAATTGCAGGAAAAAGTGGCTTGGACATTGAGGAGAAGATCTTTGAGACTCTTGGATTTTGCCAGGACACTAAACGGGTATTTCCAGGACTCCTTGCTGAATCAACCGGACCTCAGATCAAGGATGTTCTCACAGAGGTTCTTGTCGAAGAGGGAATGGAAAAAAGCCTGGCAAGAAAAACCATTGAGGAGAGTTGCAGCGAGGGAGACACGAGTCATCCAGACAAACTGAAAGCAATTTCTGACGTGAGAATGTTGTTCAGAATCCTCAAGGCAGAGAATATTAAAATAGCAATTTGCACTTCAGACAACAGAAAAGGAACGTTGGCTACTCTAGAAAAGCTTAAACTCTGCGAGTACATTGACTATATTGTGTGTGGGGACGATCCAAACACGCTTCCAAAACCAGACCCTCACAATGCTTGGAAGATCTGTGGCGATCTTAATGTCGATCCACAACATGCTGCCATGGTTGGTGATACTCAAGCTGATGTTGGAATGGGATATAATGCTAAACTGGGCTGGAGTATTGGTGTACTTAGTGGTATAGGCGACACTGAAGATCTGATGCCGGAAGCAGACCATGTTGTGAAGGATGTCAAGGACATCCTGCCACTAATCCTTGCTGATGACAGATGGAAGGATTACTATGCATATTTCAAGGATGATCGTGTTTTAGTTGAACCGCTCCAGTTTGATGAGAATGACTTGGTTGCCAAGGACAACAAACTGAAGAATGTATCAGCTGTTATTGTTGATTTGAATGGAACACTTCTGTGCATGCACCGCAGATACACAGACTGGATGGAAAAACTTTGCACAAGACTGGAAACCATGACAGGTCTGAAACTGATACAAAAGGTTCACACAGTACTTGGTGCATGTCAAGACTCAAAAAAGATCAAGAGTGGTCTTATAGCAGAGGGTCGACAACACCAACTGAAGTCAGCTCTGGTGGAACTTCTCATATCAGAAGGAATGTTCTATGAGGAAGCCATCCTGGTCGTCAACCAAGCGTGGCAGGAATGTAACTCAATTCTCCAGGACTCACCGCTCGTGCTGGATAAAGATGTGAAGAAATTCTTCAAAACGCTGAAAAGAAGTGGAGTGAAAATTGCAGTCTGCACAGAGGACTTGAGAGAAAATGCTGTCAAAGGTCTTCTCCAGCTGGACGTCCTGAGGTATGTGGACATGATGGTTTGTGGCGATGACCCTCACAGCGAGCCAAAACCATCTGCTCACAACGCCTTGCTTATCTGTGACCAGCTTGGCGTGAAGCCCTCGGACACCATTGTCATAGGCGACACTGTCTCTGATCTTCACATGGGAGAACTGGCTCATGTGAAGGCAAAGTTTGGAGTTTTAACTGGAGTAGGATCTCAATCAGAACTCAAACCCTACGCTGATCATGTTGTCGCCACCATCAGTGACGTCCTTCCACATATTATGCAGAATGACAACGATGTGAAACCAGCAGAAGACAAAGATACTGGACTGATGGGTAATAAAGTAGGTAGCTTAGGTGTGATAAATCGATCTTATTTTTATCATAGTGTTAGAGCTTTCTCTACTTCCAGTAGATCAAACGTTAGAATTACTAATGATGTTCCAGTATATGACTATGTTATTGTGGGAGCTGGGTCTGCAGGCTGTGTTCTTGCAAACAGACTGAGCAAAGATCCCCAGAATAAAGTTCTGGTTTTAGAGGCAGGACCTGCAGATACGACTTGGAAAATAGACATGCCAGCTGCTCTAATGTACAACTTGTGTGATGATAAATATAACTGGTATTATCACACACAGCCTGAGAAAGGCATGAACAATCGGGTCATGTACTGGCCCAGGGGCAGAGTTTTGGGTGGGTCTTCATCTCTAAATGCAATGGTTTACATTCGAGGTCATGCTTTTGATTATGATCGCTGGGTGAAGGAGGGAGCTTTGGGTTGGTCTTATGCAGAAGTACTTCCTTACTTTAAAAAGTCACAAACTCATGAGCTGGGTCCAGATGAATATCAGGGAGGATCTGGACCTCTGCATGTTAGTAGGGGAAAAACAGGCAATCCCTTGTTCCAGGCATTTATTGATGCAGGAATGCAGGCAGGCTACCCTTTTACTGAGGATATGAATGGTTATCAGCAGGAAGGGGTGGGGTGGATGGACATGACCATCTACAAAGGCAAACGATGGAGTGCTTCCGATGCATACTTGAAACCAGTTCTGTATCGTACGAACCTGGAGGTTTTGACCAAAGCCTTCACCCAAAGACTGATCTTTGACAAAAACAGAGTTGTTGGTTTGAGGTTTGAACACAAGGATGAAGTAAAAGAGGTCAGAGCCAGTAAAGAAGTTATCCTCAGTGGTGGTGCTATCAATTCTCCACAGCTTCTGATGCTGTCTGGCATTGGTAATGCAGATGATTTGAAGGCTTTGGATATCACACCAGTAGCTCATCTTCCAGGAGTGGGCAGCAATCTGCAGGACCACCTTGAAGTATACATTCAGCAGGCTTGCACAAAACCTATCACTTTATATTCAGCTCAGTGGAAGTTCCCACACAACATGGTCAGGATTGGTCTTGAGTGGTTCCTTCATTCAACTGGCCCTGCAGCCTCTGCTCACTTAGAGGCTGGTGGCTTCATTCGGAGTCGAGCTGGAGTCCCTCATCCAGACATCCAGTGGCACTTCCTTCCATCGACTGTAAATGACCATGGCAGGAAACCAGGATCGTGTCACGCATTCCAAGTGCATGTTGGGACAATGAGACCCACCAGCAGAGGCCATCTCAAGCTGAAATCTGCAAATCCTCACGAACACCCAACAATCGTTGCCAACTACCTTACTACAGAAGAGGATGTTGTTGACATGAGAGCGTGCGTCAGGCTGTCCAGAGAAATATTTGCACAGAAGGCATTTGATCCTTTCAGAGGGAAAGAGATAACCCCCGGGTCTGAAATAACCACTGATGCTCAGATTGATGACTTCATCCGCAGACGGTCAGATAGTGCCTACCATCCTTCCTGCACTTGTAAAATGGGTAGCCGCGACGATCGCATGGCTGTTGTTGATGCACAGACGAAGGTCATTGGTGTTGAAGGGTTACGTGTAGTTGATGCCTCCATCATGCCCAGTGGTGTCAGTGGAAATCTAAATGGACCGACCATCATGGTGGCTGAGAAGGCAGCCGACATCATTTTGGGAAATCCCCCATTGCCAAAATCCAGTGCTCCTGTTTATTCCCCAAAATCACTGGATACTCAGCGATAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00702	Hydrolase	haloacid dehalogenase-like hydrolase	Domain	Interproscan
PF00732	GMC_oxred_N	GMC oxidoreductase	Domain	Interproscan
PF05199	GMC_oxred_C	GMC oxidoreductase	Domain	Interproscan
PF13419	HAD_2	Haloacid dehalogenase-like hydrolase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000172	Domain	Glucose-methanol-choline oxidoreductase, N-terminal	Interproscan
IPR007867	Domain	Glucose-methanol-choline oxidoreductase, C-terminal	Interproscan
IPR011533	Family	Oxygen-dependent choline dehydrogenase	Interproscan
IPR012132	Family	Glucose-methanol-choline oxidoreductase	Interproscan
IPR023214	Homologous_superfamily	HAD superfamily	Interproscan
IPR036188	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR036412	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR041492	Family	Haloacid dehalogenase-like hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11552	GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005743	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0008812	Molecular Function	choline dehydrogenase activity	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0016614	Molecular Function	oxidoreductase activity, acting on CH-OH group of donors	Interproscan
GO:0019285	Biological Process	glycine betaine biosynthetic process from choline	Interproscan
GO:0050660	Molecular Function	flavin adenine dinucleotide binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf27_5.39 global RNA-seq network