Gene detail

Detailed information of CsqKR_Scaf264_13.34 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf264_13.34	UNCHARACTERIZED	chr6	26230600	26234778	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf264_13.34

CAGAAGAGAAAATAACATATACAAATAAACCAGAAGAGAAAATAGCATATACAAATAAACCAGAAGAGAAAATAACACATACAGATAAACCAGAACAAAATGTTTCGGTTATGAGTAAAGATGATGTCTCTTGTAATCAAGTTGGTAAGAGAAAAGACAGTTATGAATCTAAAACTTTTCAGTGTGTTGTAGAAAAGGAAAATTCAGTAGAAACAGATAATTCATTAAGTGCACCTTTACCTGGAGAATCTAATTCAGATTTTGTATTAAGACTGTTGGATAAAAGAAAACATCTATTAAGTAAAATGGCTGATGTCCAGCGGGTTGTGAATACTAATGAAGATAAAAATGAAAATAGAACTAAACACAACTCAGAAGTTATTCCTACTAAAATATCTACCAGTGAGTCTAAAACGACAGATGATAAAAACGTCCATGTTAGATCTGGAAATAAAAAACATCGTCGCAAATCCAAAAAAGGGTTATCTCCCTTGACCTATGTTGGTGACATGGTTGGACAGTGGATGACAAAGGAGACACTGGAATATTTGAAAAATGTGGAAGTTCTGAAGGAGAGAAAGTGTTGAAATCCACTGATCCAGAGGTTCAGCAACACTACATGAAGTTACTGAAACGAGCTGAAGTCAGAGAAAAACTGTTAGATTCTGATGATGATGAGGAAGATTCTTCCACTCCGTCCAAACCACTTCCAGATTATAAAAAACTGAAAGAAGAGACTGACCTGTTTCAGTCTAAAGTGGAGTCTTTCTTCAAGGGACATTTAATGGTGAAGCCACCAGAAAAAGAGGAATCCTCAGAAAATGACAGACCTATTTACCTGCCAACAGTGGACTCCATAGATCAGCTGCAGATCAGAAGAAAAATTGTCATGGACAGGCTCAGTAAAGCTGTACCTGATTTGTTGACACCATTAAGATTGACTCTGCAGGATGTGACAAGAGAATTACGAGAACTCATCTTCACGTTCAGACTTGACAGCAAGAATATTTTGTTCAAACCTGCAGAATGGACTTTAGTGGCTTTGATTTTGTTCAGATTGTTATCTGTGAAAATGAAACAGGTTGAAGAAGCTTTTAAACAATCATCTTTTGTCCATTTCTGTAGTGTCCTGTTGGAAGGACTTGGACACAGCCAGAAAGACATTGACACAATAGTTGACCAACTGATTTCTAAAGACTACAACAGCAAGCTGAAAGTAAAATAAAATCACAAAACAAAGTCCATTGTTGTGTGTCATGTTATCATAGTTTTGGTGGATTTTGGTGGTTAAGTATTTCAATTAATGAATTTAACTTACAAATAAAAATATAAATAACAAAAAACTAAATTAATAGGATTCCAAGATGCACATTTTTTCCTTTAGATATTGATTTTCAGATGTTAAAATTTAGGATAACCTTAAATTATGTTTATTGTAAGTTATATTTTTGGAAAGCATTATGATATATATGTATAATGATGTTACATATGTGTATTTTTCTTGTATAAAAAATTTCCCATGTCATCATATAGGTACTTTTATCTTCATTGATACAGAACTGTTTCATCTGAAAACTGCTTAACTAAGTAACATTTACATAACACCACATTTTAATACTGATAACTGTGTGGTGTTATAAAAAGTATTTTTACATAAAGACACGAGGAAGGAGGTCCTCTTGAACTACTTTTTTGATCAACACCTTCAGGTTAACACATTCTTTTTTAAACATGATTTGATACACTGGCACTAGCAATCTTCTAATGAGATAAAATCGTATATCTTATGTTCACCTCACTTAAAAACTGTATTTTTAATAGTTACCACATTTAGTTATTAAATTAGCAAAAATTGAAAATAGAAATTCACATATTCCGTATCCATAGATACATATAGCCAACATCCACCAGTGTTTGAGGTTCACCAGTTCAATACAGTTAAAAAGTGTAATTCCTTTTAAACAGTACATGCATAGTTCCTGTAAACTGAAAATATACAATGGAGGGAAATAAGTGAAAATGTTAAATCTGGAAGAATTTTATAACGTATTAGCAATGCTTTTCAATAACATTTGTTGGTTTTGAAATAAAAATAGAACTGCCTTTAAGATAAATTTAAAGTACAGCTGGAAATACTTTGTAACACATTTTCACCTAAGAGAGGACAACTGCATTAAAAAAAAAAATTTAAAAAATATTTTACTTTTTTTACTGTTTTGTTTTTTAAACATTAAATACTTTTGCTTCTTTGTTTAGGAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR039693	Family	Rtr1/RPAP2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14732	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0008420	Molecular Function	RNA polymerase II CTD heptapeptide repeat phosphatase activity	Interproscan
GO:0043175	Molecular Function	RNA polymerase core enzyme binding	Interproscan
GO:0070940	Biological Process	obsolete dephosphorylation of RNA polymerase II C-terminal domain	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf264_13.34 global RNA-seq network