Gene detail

Detailed information of CsqKR_Scaf245_5.10 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf245_5.10	SH2-SH3 ADAPTOR PROTEIN-RELATED	chr3	532500	553536	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf245_5.10

CAGATGCTCATCCATATATCTACCATGGTCACACACTGACATCTAAAATAAAATTCCTTGATGTCCTCAAAGTCATCAAAGACCATGCCTGGGTGGCATCAGAGTACCCACTGATCTTGTCTATAGAAAACCACTGTAGTTTAGGGCAGCAGAGAAATATGGCAATGGCTTTCAGAGAAATATTTGGTGATCACTTGTTGATGGAACCAGTCTGCAAGGATGCAACCACACTGCCGTCCCCAGCACAACTAAAACACAAAATAATCCTAAAGCATAAGAAACTACCTGAATGGGTGGATGGAAATGAATGGAAATACACAGTTTCTAGTGAAGATAGTTATGCTGATGGTGATCTGAGTTCTTCGGTGAAGAATGGAATGATGTACCTGGAAGACCCAGTAGACCATTCTTGGCATCCGCACTTCTTTGTGCTGAACGAGCAGAAATTGTTTTACACTGAGGAGACTCGCATGGAAGACGATGACAACGATGACGAAGAGGACAGTGGGTCTCCTGAGGGTAGACCAACTGATGAGCTGCACTTCAGTGAAAAGTGGTTTCATGGCAGACTGGAGGGGGGCAGACGTCGTGCAGAAGAGCTTCTTAAGGAGTACAGTTACCTAGGCGACGGAACCTTCCTTGTCAGGGAGAGTGACACGTTTGTGGGAGATTTCTCTTTATCTTCTGGCGACAGGGTAAAGTGAACCATTGTCGAATCCGGTCGCGACAGGAGCGAGGACAGGTGAAGTATTACCTCATTGACCCCATAACCTTCGACAGTCTGTACAGCCTCATCACACACTACCGGCAGTTTCCCCTCCGCAGTTCCGACTTCACCATGATACTCAAAGAACCAGTACCACAGCCTCAGAGTCACGAGGGAAAAGAGTGGTACCATGAAGGAATGAGTCGGGTGATGGCTGAAGACATGCTGAAGAGAATTCCCTATGATGGAGCCTACCTGGTACGACACAGTGGAACAGACCAGTACTCGTATGCCATCTCTTTCAGAGCTGAGGGTAAAATCAAGCACTGCAGGATCAAACAAGAGGGTCGACTGTTTCTCATCGGCAATGCACAGTTTGAAAGTTTAGTGGAGCTTGTCAATTACTATGAGAGGAACCCACTGTACAAGAAGATGAAGTTGAAATACGCCGTCAATCAGCAGGTTGTGGAAAGACTCAATATGGAAGCAGACGACAGTGAGGTTTATGAGCCCGGGATTTATCATCTTCCCAATGTCTTTGTCACCAGGCTGCGAGTGAAAGCTCTACATGAATACGCACCCAGCCGATCTGATGAACTGGCTTTCCTCAAGGGTGCCATTATCACAAACGTCACAAAGCATGATGGAGGATGGTGGCGCGGTGACTATGGCAACAAGAAACAGCACTGGTTTCCTTCAAACTTTGTTGAGGAAATTGATTCTCCGTCAGATGTTTTATCTAACGAATCCACCCCATTGGGCTCTCTACAACAAGGATCCATTGATGTACATGGGTGTCAAACAGAAGTATCTGTTGGTCGACCAGGGCAGCCATTTGCATTCAAAATCTATAGTCGAAGCCAGGGTCTGCCACTAGAGGTCGCCTGCGAATCAGAAGCTGACATGAAGGACTGGATCGAAAAAATAGCGCAGTGTTCTACAAGTGCGATACAGAGGATTTCCAAATTCTCTTCTAAGAGTGACTTAGAAAAACTGACCTCTGAGCAGAGAATGTTGGAGAGAACAATGCGAATTGCAAGAGAGTTTTCTGATCTTATTGTCTACTGCAGAGCCGTGCCCTTTGTCCCAGATGAACTACCTGGATCTTACTATGAAATGTCTTCTTTCCCTGAAACCAAAGTTGAAAAATGGGTGAACAAGTCTAAAGCTAAATTCTTTGAAACTCACATACCACAGAAAACAGTTGAGTCGTGTTTACCCAAAAGGTCCCCGTGTGGATTCCTCCAACTACGACCCAGTGCCCATATGGAACTGTGGGTCACAGCTGCTGGCTATGAACTACCAGACTCCAGACAGACCCATGCAGCTGTACCAGGGCCGATTTCTGATGAATGGAAGATGTGGTTTTGTGCTGAAGCCAGATTTGATGGATTCTGATCTGTTTAATCCATACGAGAAGAAATTTCTCACACAGATAGGAGTTGATCCAGTCACCCTCACTATTAATATTATTGGTGCTCGACACGTTGTGAAGTCAGGTCGGGGCATCGCCAGCCCATTTGTTGAGATAGAAATCACAGGAATGGAGTGTGACAATCAGAAATTCAAAACAGGAACCAAAGTAGACAATGGCTTGAACCCAGTGTGGAATGACTGCTGTGTGTTTGATGTGCTGTGTCCAGATCTGGCCCTTATTCGCTTCGCAGTCATGGATGAGGATATTTTTGGTGATCCGAACTTTCTTGGACATGCAACATTTTCTGTTAAGAGCCTGAGACCAGGTTACAGAAGTGTGCCACTGAAGAATGGTTACAGCGAAGATTTGGAGCTCGCCTCTCTACTGATATTTCTTGACATCACCAATCCAAAGGAAGGAGAAGAGTGTGATATCTACGCTTCCATCCAAGAACTGAGAGACCAGTCGGACATGCTGGCTGCACAAATCAGTGAACTGGAACAGTGCGGTGACCGCGAAACTGCCACCATGCAACGTCTTCGCCTGGAAGAGGTTCAGGAGATGCTGCTCGCCAAACACAAAGGAGAGAAGCAGCAGAAAAAATGTCCCTAGACAACAGATTGTCTACCGCCGCCAGTCAAACAACTGACCTGTCCGCGTGAGAGAGAGAGAACTGACTGCCTGTGATACTGTCAACACACAAATGTTGACACTTGTTGTTCTCTGATACACTGGTATTGAAGATCATCAACATTTACACTTACCTTTAGTACTCGTTTCATCAGTATCTTGATATCATCAACTAATGGACATTATCAATATCTAAACAAAAATTCTGGACATTATCAATATCTAAATAAAAAAACAAGACATCATCAATATCTAAACAAAAATTCTGGACTTCATCAGTATCTAAATATGGCAGAACTGACATTACAATTATGTGAATAAAAATATTCTGAACATTATCACATTATC

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|SH3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00017	SH2	SH2 domain	Domain	Interproscan
PF00018	SH3_1	SH3 domain	Domain	Interproscan
PF00169	PH	PH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000980	Domain	SH2 domain	Interproscan
IPR001452	Domain	SH3 domain	Interproscan
IPR001711	Domain	Phospholipase C, phosphatidylinositol-specific, Y domain	Interproscan
IPR001849	Domain	Pleckstrin homology domain	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR017946	Homologous_superfamily	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily	Interproscan
IPR035023	Domain	PLC-gamma, C-terminal SH2 domain	Interproscan
IPR036028	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR036860	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR051184	Family	Tyrosine-phosphorylated adapter molecule	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19969	SH2-SH3 ADAPTOR PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004435	Molecular Function	phosphatidylinositol phospholipase C activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006629	Biological Process	lipid metabolic process	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0008081	Molecular Function	phosphoric diester hydrolase activity	Interproscan
GO:0016477	Biological Process	cell migration	Interproscan
GO:0030971	Molecular Function	receptor tyrosine kinase binding	Interproscan
GO:0035556	Biological Process	intracellular signal transduction	Interproscan
GO:0035591	Molecular Function	signaling adaptor activity	Interproscan
GO:0036493	Biological Process	positive regulation of translation in response to endoplasmic reticulum stress	Interproscan
GO:1902237	Biological Process	positive regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway	Interproscan
GO:1903898	Biological Process	negative regulation of PERK-mediated unfolded protein response	Interproscan
GO:1903912	Biological Process	negative regulation of endoplasmic reticulum stress-induced eIF2 alpha phosphorylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf245_5.10 global RNA-seq network