Gene detail

Detailed information of CsqKR_Scaf231_8.21 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf231_8.21	TATA BOX-BINDING PROTEIN ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT C	chr5	226759	238273	+

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf231_8.21

ATGAGCTTGCCAGGAAAATTCTTCCCTGTATCGTTTTGCCCATACAGAGAAAAACGAGAGATATTTCTAGACTTTGGAAAACATCTTCACGTTGATCTTACAGAAAACAAAGAATTTCAATCCCAGACTATTCATCCAGGCGCAAAAGTAAATCTCGAGTTATCGGCCACTACACCCACCTTACCTTTGTCACCCGAAGCACAATTTTATGGCTTTCCTTTTGATGATCAAGTGTCTGCAAAACTTACTGAGAGAAGACAAAAAGCAGTTAAATTTTCCCTGCAATTGCCAAAGATGAAATACAGACTTCCTGCTGAGTCAACACCAGATGATCTGAAAAAAACCTTCTATGCAACTTCTGTTTTTGAGAAATACAAGTTCTATAAAATTAATCCTTTTGTCCCTAAAGTTAATGCTGCTTACACAGGGGGATGTTTGGCTTCTTTGGGTTCCTCACAGGATAATGTCACTCGGCTAGTTCTTGTGTCTGGAAAAGATTTCAGTACTCTAATAAGTTCTGATGTTACAACACATTTGTTAGAACAAACAGTTATCACAGAACTTGATGTTCAGTCTCCTGTCTTTGAAGTTGCTACAACTAAAATAGGATCAGATGAAATGAGTTTGGAATTCAACTGTTTCAAGCTGGAAGATAGTCCTAATGGTGAAGATGACAGTCAGAGGTTTCTTACCCTTGACAACAGAACATTCATGGAAGAAAGATTAACATCAATATCTCTTAGCCCATTTATTCGAGGTGAACAACTTATAGCCACTGAGAATGGGTCTCTGTATCTTGTGAAACCAGGAGAAGAGTTACAGATAATGAAAGATAACTGGCAGCCTCGTTTTAAGTGTCATGAAACTTGGAGACAGTGCTACTTTGCAGCACACCCCAGGCAGTTCGTCACAGCAGACAGATCTGTTGTGAAACTCTATGATTCTAGAACTCATTTCAGTGAATATGTTGATTTATTTGCTCTACCAAACAAGTTAGTCCATACTTCCGAGAGAATAATGGTTGCTAAGCAACAGGCATCATGTGCCTATCATCACTTGGTTGTGACAGATGCATTTATGTTTGTCATTGACCAGAGATTTCCTGGCCATCCTTTGAGTAACTGGTCATTTTCCCAGAATTCACCTCCACAGTACATATCATCCTGTGACATTTCACTGACCAATGATGTCCACACCAGTGTCATTGCTGTAGGCATCCAGCACCCTCCTGAAACATATTGCTATCAGGTTCAGTTTGGTGGAGTGACTCCTCTCCAGACTGTCACTCAACCGTGGAGACTTTCCAGAATTGGAGATTTCAGTAAATTTGAAAAAGTTGTGAAAGGTGCAGACATGATGCTAGTGAAACAAAGATTTAATACATCACTGGTTGGTCTGTCTATCTGTCCAGGACAAACTGAGCATTCTCTTCATACCTTTCAGCTGGACAGTCTTGGTGAATTATATTTTCAAAATTACACAAAGCAGACATCTGCAGCTGATAAGACTTTGAGTGCAGGTCCAGGAGTTCAAGAGGGATTTCTTTCACTGCATGCAGCCAAACGAGGAGAATCCTGGTTACAAAGTCTCCAAGATCAGTTTGTTAAATATTATTCCTCAAATCCTGATAGCTATGATGTGCATAAATTTGATAGCAGTGACATGATCTTAGACTATACTGCTAAACGACTGAAACATGAGTTGTGTCATCTGTGTAACTCCACATTCAGTGATAGTAAGAAAACTTTGAAGAGAAAAACTGAGATGAACAACAGGTGCAAAAACTGTGGTTGTGTACAGACTCAGTCACAGTTTTTAGGTAAAGAAGACTTGGTGAACAATTTTATAAGTGATAGTAATGTTTGTGGGATGTGTGACCACCCGTTGACAGAATGCTCAAATATCAAACCTCTGAGAGAGAGCAGAGAATACATGGAAGGATTTGATGTTTGTGAGACATGCAGTCATTCACTGAAAATTGGTAATCTTCTGTATGGAATTCGGGCTAAGAACACTGTGATAGGAGATAGTAGTCATGGTTTTGAACTGTTTAACCAGCAAGTCTCTGGTATTGATGGTTTTCCACACTTCAGCCCCAACACCCAACTTTTATGCAAACTGTGGAATGGAGAATCTGACTTCATGGATCTTGTCTTAGCACGGGAAGAGGAAAGAAAAATTAAGAAAAAAGAAGAAAAGAGAATATTAAAACTGGAGAAGAGAGAAAATAAAGAGCAGGATAAGAGGGGTGACTCTAATAGTGACTCTGAGGAAGAGATGATAACTAGCAGTGAAGAAGATTCAGGAAGTGATAATTCTGGTGTGGTGGACATTGATGTAAGCCAAGACATGACTGATGAAAACATTTCTGAGGAGACCAGTGTTGAAGACAAAGAAGCAGATAAAAAAGAGTGTATTACAAACACAGAATCAGTAAAATCAGAAGAACAGACATCATCTGATTCAGGTAAGTTAGATACAAAGTCTTGTAATGGTGTCTTGCCAACATTCCAGACTCTAACAAGACTGAAAACACCTAAAACAAAGGAAAAAGTAGAAAGTACCAAAAAAACTGACAATACAACAATTGTGAAGCCATCTTTGGAGAGTAGTCTGAGTCAGAAAGCTGGGATTAAACAGCCAGACATTAGAACAAAAGTTCATAAAAGAAGTAGAAACCTGTCAACATCCTCCAGTGAAGCTGGATTTCTGGCAACTCCATCTAAGTTGAAAAATAAAGACACATTTGCACCAGATGACAGAGAGGAGAAGGACAGTTTGGAGATGTTTTCACAGTTTGATTCACATCAGTTCTTGTTAAATTCACTACCTACCACAGCTAGTTCTACTAAACAAAAGAATCCTTTTTCAAAGCAGAGATGGAAGCACATCAGTGGATTTTGA

Transcript

CsqKR_Scaf231_8.21

CTTGTTCCGTTAACCAATCGATAACTCTTTGGCGTAACGGTTCTAAAAGTTCGCTGGCTTCATTTCAGTGGCTGGAATTGTTCGCTGCCTTTATTTCAGTTAAATATAACGAGGGGAAAATTAGAAATTTAAGAAATAACAGAACTGACAATAATTATGGCTCTAAAACTGTTTTTCAGCGTAATTTCAAGATAAATGTCGAACACACCTATGTTTTTTAATCTACCTCAAGGGCGAAACAAATTAAGAACAAAAATAAAACAAGTAGAACTCTGAAAAGTGAAGTAAAAATTGTTTCGTTTACTATGACTAATCACATTCGATGATTCGTAAGATCAGCTTCCATTTTTGCAGATTAGCTGTACCGTGTACGCCTTGTTGGAGATTTAGATAATATCTATTACGTTAGACAGTCTATATTATCTTATTATTATTTCAATTGCTAACAAAAGGAACATAATTTGACCATTTCAGGTATTACTATTACTATTTGTATGGTCAAACAATGAGCTTGCCAGGAAAATTCTTCCCTGTATCGTTTTGCCCATACAGAGAAAAACGAGAGATATTTCTAGACTTTGGAAAACATCTTCACGTTGATCTTACAGAAAACAAAGAATTTCAATCCCAGACTATTCATCCAGGCGCAAAAGTAAATCTCGAGTTATCGGCCACTACACCCACCTTACCTTTGTCACCCGAAGCACAATTTTATGGCTTTCCTTTTGATGATCAAGTGTCTGCAAAACTTACTGAGAGAAGACAAAAAGCAGTTAAATTTTCCCTGCAATTGCCAAAGATGAAATACAGACTTCCTGCTGAGTCAACACCAGATGATCTGAAAAAAACCTTCTATGCAACTTCTGTTTTTGAGAAATACAAGTTCTATAAAATTAATCCTTTTGTCCCTAAAGTTAATGCTGCTTACACAGGGGGATGTTTGGCTTCTTTGGGTTCCTCACAGGATAATGTCACTCGGCTAGTTCTTGTGTCTGGAAAAGATTTCAGTACTCTAATAAGTTCTGATGTTACAACACATTTGTTAGAACAAACAGTTATCACAGAACTTGATGTTCAGTCTCCTGTCTTTGAAGTTGCTACAACTAAAATAGGATCAGATGAAATGAGTTTGGAATTCAACTGTTTCAAGCTGGAAGATAGTCCTAATGGTGAAGATGACAGTCAGAGGTTTCTTACCCTTGACAACAGAACATTCATGGAAGAAAGATTAACATCAATATCTCTTAGCCCATTTATTCGAGGTGAACAACTTATAGCCACTGAGAATGGGTCTCTGTATCTTGTGAAACCAGGAGAAGAGTTACAGATAATGAAAGATAACTGGCAGCCTCGTTTTAAGTGTCATGAAACTTGGAGACAGTGCTACTTTGCAGCACACCCCAGGCAGTTCGTCACAGCAGACAGATCTGTTGTGAAACTCTATGATTCTAGAACTCATTTCAGTGAATATGTTGATTTATTTGCTCTACCAAACAAGTTAGTCCATACTTCCGAGAGAATAATGGTTGCTAAGCAACAGGCATCATGTGCCTATCATCACTTGGTTGTGACAGATGCATTTATGTTTGTCATTGACCAGAGATTTCCTGGCCATCCTTTGAGTAACTGGTCATTTTCCCAGAATTCACCTCCACAGTACATATCATCCTGTGACATTTCACTGACCAATGATGTCCACACCAGTGTCATTGCTGTAGGCATCCAGCACCCTCCTGAAACATATTGCTATCAGGTTCAGTTTGGTGGAGTGACTCCTCTCCAGACTGTCACTCAACCGTGGAGACTTTCCAGAATTGGAGATTTCAGTAAATTTGAAAAAGTTGTGAAAGGTGCAGACATGATGCTAGTGAAACAAAGATTTAATACATCACTGGTTGGTCTGTCTATCTGTCCAGGACAAACTGAGCATTCTCTTCATACCTTTCAGCTGGACAGTCTTGGTGAATTATATTTTCAAAATTACACAAAGCAGACATCTGCAGCTGATAAGACTTTGAGTGCAGGTCCAGGAGTTCAAGAGGGATTTCTTTCACTGCATGCAGCCAAACGAGGAGAATCCTGGTTACAAAGTCTCCAAGATCAGTTTGTTAAATATTATTCCTCAAATCCTGATAGCTATGATGTGCATAAATTTGATAGCAGTGACATGATCTTAGACTATACTGCTAAACGACTGAAACATGAGTTGTGTCATCTGTGTAACTCCACATTCAGTGATAGTAAGAAAACTTTGAAGAGAAAAACTGAGATGAACAACAGGTGCAAAAACTGTGGTTGTGTACAGACTCAGTCACAGTTTTTAGGTAAAGAAGACTTGGTGAACAATTTTATAAGTGATAGTAATGTTTGTGGGATGTGTGACCACCCGTTGACAGAATGCTCAAATATCAAACCTCTGAGAGAGAGCAGAGAATACATGGAAGGATTTGATGTTTGTGAGACATGCAGTCATTCACTGAAAATTGGTAATCTTCTGTATGGAATTCGGGCTAAGAACACTGTGATAGGAGATAGTAGTCATGGTTTTGAACTGTTTAACCAGCAAGTCTCTGGTATTGATGGTTTTCCACACTTCAGCCCCAACACCCAACTTTTATGCAAACTGTGGAATGGAGAATCTGACTTCATGGATCTTGTCTTAGCACGGGAAGAGGAAAGAAAAATTAAGAAAAAAGAAGAAAAGAGAATATTAAAACTGGAGAAGAGAGAAAATAAAGAGCAGGATAAGAGGGGTGACTCTAATAGTGACTCTGAGGAAGAGATGATAACTAGCAGTGAAGAAGATTCAGGAAGTGATAATTCTGGTGTGGTGGACATTGATGTAAGCCAAGACATGACTGATGAAAACATTTCTGAGGAGACCAGTGTTGAAGACAAAGAAGCAGATAAAAAAGAGTGTATTACAAACACAGAATCAGTAAAATCAGAAGAACAGACATCATCTGATTCAGGTAAGTTAGATACAAAGTCTTGTAATGGTGTCTTGCCAACATTCCAGACTCTAACAAGACTGAAAACACCTAAAACAAAGGAAAAAGTAGAAAGTACCAAAAAAACTGACAATACAACAATTGTGAAGCCATCTTTGGAGAGTAGTCTGAGTCAGAAAGCTGGGATTAAACAGCCAGACATTAGAACAAAAGTTCATAAAAGAAGTAGAAACCTGTCAACATCCTCCAGTGAAGCTGGATTTCTGGCAACTCCATCTAAGTTGAAAAATAAAGACACATTTGCACCAGATGACAGAGAGGAGAAGGACAGTTTGGAGATGTTTTCACAGTTTGATTCACATCAGTTCTTGTTAAATTCACTACCTACCACAGCTAGTTCTACTAAACAAAAGAATCCTTTTTCAAAGCAGAGATGGAAGCACATCAGTGGATTTTGAGATTTTATTATTATTATTATTTTTTTTTTATCTCTTTAATAAAAGAAGTTTAAATTGATTTTTAAAATGTTTAATATTAGCCAATTAATTCATAAATAGTTGATTTAACTTTTTAATTGTGAACTTGATTCTTTTTTATTTTGGAGTGTTTTACAAAGTCATCATCTGTATACAAACATGTTATAGGTTACAGTAATAACGATGTTTCCACTTTAATTTGGAATAGTTTTATAATGAGCTTTGTTTTAGAGATTGTATACATCTGATATTATAAAAGGAAAAGAACAAACTGGTAAGGTACTCATATGACAAGTGATGGGTCCCAAACTGAATCCTCATTTATTAGAGCATTTCGAGTTCCACGGTGACATATGAAAGACTGATGTAAATTAATAATAAATTTCTTATGATGGATAAAATGCAGATGAAAGAAAGACAACATTAACAGCAGATATTATGTACATTACTAAATAATTTTCCTGAAATCTAATAAATAGTAATAAAAAAATTATTTTTCAATCCTCATTTTTAGTTAGCTATCTGATTCAACTGATTTTGCATGACTATACTGTAATAGTTTTATATACAAGGGAAATAAATCTTTTCAGTCTATTGTTTTTACTAGTTTATTTTATAGTTTTTATTTAGATTAATTGAAACGAATAACTAATTAATTAATTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20641	TAF1C_beta-prop	TAF1C, beta-propeller	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038801	Family	TATA box-binding protein-associated factor RNA polymerase I subunit C	Interproscan
IPR049087	Domain	TAF1C, beta-propeller domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15319	TATA BOX-BINDING PROTEIN ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT C	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001164	Molecular Function	RNA polymerase I core promoter sequence-specific DNA binding	Interproscan
GO:0001650	Cellular Component	fibrillar center	Interproscan
GO:0006360	Biological Process	transcription by RNA polymerase I	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf231_8.21 global RNA-seq network