Gene detail

Detailed information of CsqKR_Scaf228_9.6 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf228_9.6	CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN	chr10	12545643	12566902	+

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf228_9.6

ATGGCTGACCGAGGAATATACGTCTGCCATGCACAGAATGTAGCTGGTCGTGCCATGGCATCAGCGATGGTGGATGTGGAGAGGAGAGAGCTACCAGAGTTAGACTTGTACCCAGAAATGTCTCAGACAATATCACAGGGTGGAAGTGCACTCTTCCAGTGTCGTGTAACCAAAGGTATTCCAGCTCCTGAGATTGTCTGGTCCAGAGCAAATGGAGAACCATTCACGTCTACAACTGACATAATGGTGGAGAATGGGGTGATCATGTTCAAAGGGGTGACAGGGGATGAACAAGGAACTTACATCTGCACAGCCACCAATGCAGTGGGCACAGTGACAGCAACAGCTGTACTCAAAATTGAAGGACCACCCAAGGTGACAATAACCCCAGGAAATGAAGTGATCACCATAGTGGGAGAGAGAGTGTCACTTGAGTGTACAGGAGAAGGTGAACCAACACCCAACGTCCACTGGCGCAGTCAGCAGCCACGTCGCAGTGACATCCTCCCTGAGGCCTATGAACCAGAGCAAGGCACAGCCAGCCTCATCTTCGACTCCGTCAAAAAGCGAGACGAGGGACGATACATTTGTGTCGCGTCAAATGAACGAGGTCACGTTGAGGCCAGCGTCGATCTTAAAGTGAGAGACAAAGAAGTGACACCAGGTGGCGTTGTGGTTGACATTCAGGGACCTGATCATCTGTCATTAGTGGAAGGACAGTCAGTCGAACTGACTTGTAATGCTAAAGGCCTTCAACAGCCCACAATCCACTGGCGTCGCCCTGGTAACCAGCCGTTACCGCCCAATCACCGGGTGAACCAGGGAGTGCTGTATATTCCCAGAATCACCGAGGACTACCAGGGAGAGTACATCTGTGTGGTGCAGGGCAGGTCAGGCCAGTCCTTCACCGCCTCCATCATCCTCATTGTCACAGTCACTTCACGTTTGACCATCTCACCTGCAAAGATTACAGCAAGATCAGGGGACACAATTCGCTTGAACTGTCAGCCATCTGGAACGGGATATCACACCATCGAGTGGCAGAAGGTAGATGGTGCTATTTCCCCAACTGCTGTTGAACGTCAAGGTATTTTGGAAATTCGTCAAGTGACACCTGCAGATGCAGGTCAGTACAGGTGCATAGCAACTAACGATGCTGGGGCATCATCTGAGGGATATGCTGTCATTGAAATCTCAGTACCTCCGACAGTGGTTGTGACCCCAAAGAGTTTGGTCAGACAGATAGGTCAGACGGTTGAGTTGAGGTGTGATGTCACTGGAACACCGACTCCCACCTGTGGTGGCAGAGAGAAACTGGAGAAATGCCACCTCAAGTCCACATCAGAAATGGCATACTTACGTGATATTTACAACGTTGCTCTTGAAGATGTTGGTCGCTACATCTGCACAGCAACAAACGAAGCTGGCACAACACGAGACTACACATTCCTCAGAGTGACTGGTGCACCTGTACCCAAAGTTCACTGGTCAAAACTTGAAGGACAGCTGCCGGCTGATGCTATATTTGAGGATGGAGTGCTGATCATCACCCAGACCAATATAATATATTTTTTTGTTCCAGCACGTCCACTTATTACTGTACCCCAGGACATTAACACTGCAGCCCTGGGGGGTCCAGCCACACTCTCCTGTGAAGCATCAGGTTTCCCTCAACCCTCAGTAACCTGGAGAAAAAAAGATGGAGATTTACCAGTAGATCACAATGTGGTACGTGGAGATTTGATGATTCCGCGAGTCAGAGAAAGCGATGCTGGTGTTTACGAGTGTCAGGCTACAAACCCCTTCGGCACTGTCGTCTACCCCGTTGTGTTCGCTGTTGTAGAGTCCACTGATGGGCTGATGCTGTACAATGGACAAGGGAATCAGGGGCAGGGAGACTTCCTCTGCTTCGGTCTCCGTGGAGCTTACCCAGAATTCCGCTTTGACGTTGGCGCCGGTCCTGCGATCATCCGAGGACAGAAACCTTTGAGACTTGGAGAGTGGCACACGGTTAACATCAAGAGAGACCAGAAGAATGGTACCCTGATAGTCAATGACGAGCCAGCTTACACAGGTATTGCACCTGGCAGGTTTGTGGGGCTGGATCTGGTGGACAAGATGTATTTGGGCGGGGTTCCCAACTACCAGGCCATCCCTAAAGCAACCGGATTCAACACAGGCTTCGTAGGTGCTGTGAGCCAGGTAAAACTGCAAGGTAAGCCTCTGAACCTGGGCGACGCTGCACATGAAATCTACGGGATCGAGCAGTACCAGGTGTGTCAGGACAGACCCTGTGAGAACGGTGGCCGATGTCAGCCAGTCAACAACCAGTACGGCTACCGCTGCCTCTGTCCCCAGGGATTCGCAGGATTCCGCTGCGACATTCGCGGAGAGAGGTGCTACCCAGGGGCGTGTGGGGTGGGGCGCTGCTATGACCTGCCCGGACCCACAGGATTTGACTGCTTCTGTCCCATCAATGTCACTGGTATTGGATGCAGGACTCCCTTCAACAGGACGTCATTTATTTCTTACCCCACCATCCAAGACGGCCTCCTCAAAGTCAGCATTAAGATGATGTTCAAACCACATCGCCTTGATGACGGCATCATCCTCTACAACGCCCAGCAGGAGGATGGTCTGGGAGACTTCATTGCCATCATCATCAAAGACGGCTTCCTTGAATTTAGATTTGACACTGGATCAGGACCAGCTGTTCTGAGGAACAGGGAGTTGCTGAGGGTGAACGAGTGGATCATGGTTATGGCAAAGAGAGAGGGCAGACAGGGGATGCTGGTAGTCAACAACGAGGACCCCGTTAATGGTTCAGTGGATGGAACAACCATTGGTCTCAACTTGAAGCGCCCTCTGTATCTGGGTGGGGTTGATCCGCATGAGTTCATCCCACCCTCCATCTTTATAGGAAGCATTCCAGGTTTTGTTGGCTGCATTGCATCAGAACTAATGATCAATGACAAAGATATTGATCTTGTGAAAGATGCTGTAGAAAGTTACAACATTAGAGAATGTGGTGACAGAAACATCTGCGACAGAAAACCGTGTCAAAACGGAGGTATCTGTGAGACGTTCGGACAAGACAATTACAGGTGTCGATGTACTGTAGACTTTACAGGGAAGAACTGTGAGACAGAGATAAATATCTGTATAACGTCTGAACCGTGTCGAAACGAAGGTCGCTGTCGAGTGACTGAGGAAGGTTACAAATGTGACTGTAAGCTGGGATTCATGGGCAAGAACTGCGATTCAGGTAAATAG

Transcript

CsqKR_Scaf228_9.6

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008	EGF	EGF-like domain	Domain	Interproscan
PF00054	Laminin_G_1	Laminin G domain	Domain	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742	Domain	EGF-like domain	Interproscan
IPR001791	Domain	Laminin G domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR051170	Family	Neural and epithelial cell adhesion domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12231	CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0043005	Cellular Component	neuron projection	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf228_9.6 global RNA-seq network