Gene detail

Detailed information of CsqKR_Scaf1_39.18 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf1_39.18	INNER NUCLEAR MEMBRANE PROTEIN MAN1 LEM DOMAIN CONTAINING PROTEIN	chr7	15818961	15826627	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf1_39.18

GGAAAAAAATAAAATAAAATAGAGTAATAATAATCATCATGGCCGACAAAATTAACGACGAAGAACTGGTGGCTGAACTGGAAAGATACGGGGAGACCGTGAAGCTTCCCATCAAAAAAGACAAACGCCCTATATTAATTAAGAAATTAAATCATTTACGTCTGAAGCACAGACCTGAAGATCGACCACCAACTCGCTCAAATAGACGATACACTTTAGATGTTTTAAGCTCAGACGACAGTGAACCAGAAACTACTCGTGAAACGGAACGCAAGAAAACTAAAACTGCACAGGCAGTTGATATGGTTAATAGATCATTAAGACAACGTTCGATATTGACACCAGTTGTTGACAGTGGTGCAGATAACTTGACTAGACGTTCTCTTCGCAGCAGAAAGCCTAAGAATGTTGAATCGCCGACTCGTAAAATCAAAAAGTTAAATGAAAGTAATAAACAAAATACATTATATCCCGATCTTAATTTGTTAAATGAGTCCACATATTCATTGGGAGACAGAGATGAAACTTTTGAATCATCAGACGATGACTATTTGTTTGAACAGAATGCAGATACTAGTTCATTCGAGGTACAAAACAAATCTGTGAATACCACCTTCACAATAGAAAGCAATAGCAGTAGAATTGAAACTAATACACCACATCGATATGATCCGAACGAATCCTACAGCAGTCCACTTCTCCAAAATAGAAGTACTCCCAAAAGAAAAACAAATACAAGTCATCAGTCTCCTAAAACTCGGGTTGGAAAGAAACAAAGTAAAAAAAATTACCCAGAACATGTTCGAGTGTCATGTGGTATTGTTATATTTCTTGCAGTATTTTTTGTAATTGTTGCAACAGGCTACATTTTTATTCATAAAGAAACTATTAAAGCCTGGATTCCACTTGGATCTTCAGCTAAACAAGGACGGAGAGACAAGTATTTGCTCTGTCCAGATAAGTCATCACAGGATTGCTATGAACAAGAAGAAGTTACAAAAGCAATAGATGTCATAAATAAACTCTTTGACTTTCTTAGCCAAAGAAAAGGTGAAGTATACTGTGGTAAAGTTGACCCAACAGCCGAGGTCAACATGTCCAGAGAAAAGTTTGAAGACTTTTTAAAGAAACTGGGATACTCTGGCAAGGAACGTTTGATGAACTCATGTCTGGACCATATCATTGTGAATCCACACTGGAAGATACGTGCTGTAGATAAAGATGGAAATCCAGTGAGTCAAAAACATCAAGTGGAATTCCTGGAAGCTACAGATGCTGCAATGAGTTTCTTCTGCAGACTTTGGAGATCATTTTCCGAAGTTGTATTCTCACTTTTGGTTCTTCTATTAATTGGTGTGGCTCTGTTTCTCATACTGAAATACATACGTTGGAGAATAGCTGCAAATGAGAAGGAACAGCATCAGGTGTATTCTATGGTGGAAGATATTATTGATATCTTAAAAAATCATTATGATCTGAACTCTACAAGATGAAGGAAAACATCTGGAACCTTACCTAGCACTGCAGCATGTCCGAGACCAACTTTTACCACCACACACCAGAGCTGAGATGTTGCCTATTTGGGACAAAGCAGTCAAGTTCATTGAAGCCAATGAATCCCGAATTCGTCTTGAGGAGCAGACAATTCAGGGTGAAGAATTTGTAGTTTGGAGATGGATTCATACTTCTCATAATGGAAACCGTGTTTGGCAAGGTCAAGCATTTGGTGAGCATAATGAATCTGGCAATAACAGTATGATATTCAGCCCTACACCTTGTCTAAAAATCAGAAATATGTTTGATGCTGATGTAGAAAATGATGCAGACTGGCATTTGAGCATTCAGGATGCCATTCTTGAGAAGTGCAGAAATGTAAACAGTATTCTTCATATTTATGTTGACAAAAATTCCAAAGAGGGCTGTGTGTATATGAAGTGTAGTAGTTGCCTTGCTGCTGGTAATGCAAGGCTGGCGCTGCATGGTTGGTGGTTTGATGGTCGACTGGTAACAGCACGATACTTAAAGCTAGATCACTATCACAACCGCTTCCCAGAGTCTGTGAACGCTGTCAATCCTCTGGTGCCATCTACAGATGAGATGACCTCTCTGTCACAGCCATACTACAGGTCAATCCTGGAAATGACATAAACTTTGTCAACACTGCGTGTGATCAAAATGTTTGTGCCTTTGTTTTGGTTTTAACATTTTTTTTCCAAAGACCACTGATGCACTTCAACCTTTTTTTTTGGTGTTTTTTTTTTTTTTTTGAGCATGAAGTGCTATATATAAAACTAAACAAATGGTTCAGGTTTTAACTAAAATGAAGTGGTTCCCATTATGTACAGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09402	MSC	Man1-Src1p-C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003887	Domain	LEM domain	Interproscan
IPR018996	Domain	Man1/Src1-like, C-terminal	Interproscan
IPR052277	Family	Inner Nuclear Membrane ESCRT-Associated Protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13428	INNER NUCLEAR MEMBRANE PROTEIN MAN1 LEM DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006998	Biological Process	nuclear envelope organization	Interproscan
GO:0030514	Biological Process	negative regulation of BMP signaling pathway	Interproscan
GO:0031490	Molecular Function	chromatin DNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf1_39.18 global RNA-seq network