Gene detail

Detailed information of CsqKR_Scaf19_6.11 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf19_6.11	LAMIN DM0-RELATED	chr8	27176968	27197977	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf19_6.11

ATTTACACACAAACAGAGCGGTTACCCAGTCTAAAACTACGTTTAAGGGTTAAAGAAAAATGAACTGGTTATCGCTCCACAGATATTATTACACTGATAAATAATTATTTAAGATTTGGTCTCTGGTTGAGTATTTGCATGTCTATGAATATACAGAATAAACTTCGCCCTTTCTTTACCCTTGAAATACAGAGTGGGTTTGTGTGTACAGAGTTATTGATCGAAAGAATAGTCTGTGTTAAAGGCTTGGCTTCGCTGAATGTGCACGATTTCAGTTTCACACAGATCACAGCATTCGTGTAAAAATAAATAATAAGTTTGTACGTTCGTATACCATGTAGGGTTTCGTAGCCAACAATGCGTGCAAAATTTGTTTGTGATCCTTTTTAGAAACGAGTTCTGCAAGTTTGCAAATGAGTCAGAAAAACTGTCGTGTAAGTACAGTGTACTGAAACGAAAAAGTCCTTACTGAGCATGAGCGACCGGAAATAGTGCCTGGCCTTATATGGATTTGTCACCTCCCATCGCTGGGCTACCGGCGATTTTGGTTTGACAGCTGTAGCGTTCAACGTCAGTCGTTTAGTGTCATCCGAAGGAGAAGGTACCGATCGGTTTTGTGCACGGATTCGCAAGGAGGTTGCAAACAGTTCTTCTCATTTTTGTTTCCCTAGAATTCAGCGTGTAATACTACATTAATTCATCATGTCGAAAACCACCCAGAAGACGGAAACTACAGAGATTCGTTCTAATCTCAAACCTTTCCTAGGTTCTCGAGGTAACACAACCATCATTCAGCGCCAGAGCTATGGAGGACCAATTAGTCGTCAGGGTTATAGTTCTGTCAGATTGTCCTCGGGTCCAAGCCTTTCTGCTGGCACCTTCCAGGCCATCTCGAGCTCTGGTGTCGCCGACTTCAAGGATATCCGACAGAAGGAGAAGACTCAGTTGCAAAATCTCAACGAACGTCTTGCCACGTACATCGATAAAGTTCGTTTCTTAGAAGCAAAATGCAAAATGCTGGAGGACCAACTGAATCAGCTGCAAGGGGTGGGCAAGTTCGATTTGCAGCCCATCCGGGATATGTACGAGGCTGAGCTGGCCGAGGCGAGGAAGGTGATAGAAGAACTGTCCAAGGAGAAAGCTGGCACGGACGCCAAGCTCGCCGGCCTCCAGGATGAGGTGGACCGGCTCCAAGGAACTATCGACATTATGCTTCGCCACAAGGCCGACTACCAGAGTAAAATTAACCAGCTGACTCAGCAGATTGGCGAGTACGAGGGGGAGCTGGGAACTCTGAGAGTGAGAATCAAGCACCAGGAGGCTGACAATGACAAACTTAGAGAACTCTACAACAAAGCCATGGATGACATTAGAAAACTTAGAGCTGATCTGGATCACGAAACACAGTGTCACATTGAAGCTGACAACCGAGCCCAGAGCTTCGAAGAGGAATGCGAGTTCTACAAAGCTCTTCTGGACAAGGTACCCAAGGGCGAGACGAAGCTGACGATCCAGGGCTTGGACATGAAGTCGTACTGGGACAGCAAGCTGAAGGAATGCGTGCACGACTTGAACGCCGAGTACCAGAACACCGTGGAGCTGATGAGGCAGGAGATTGAGAACAGATACGCCATGCAGCTGCGCCAGATCCAAGGAGGCGCTGTCAAGGATAACCTGGAGATGACGCACATGAGAGATGAGATCAAGAAACTGAAGGGACAGCTCAGCGAAAAGACGTCTGCTCTGAGCGATGCGGAGGCTAGAGCTCGAATTCTCGAAGGAGAGGTTGCTGATCTGCAGAGGCAGCTGATGGAACTTAGAAACGAATACGAGGAAACCAACATGAAACTGCGAGGTGACGTAGACCGTCTGCAGCAAGAACTGGAGGCTTGTATTGAACAACTTCGTCATCTCATGGACGCCAAACTTTCCTTGGAACTCGAGATCTGCTGCTACCGACAGCTGCTGGAAGGCGAGGAGAACAGAACTGGACTGAGACAAATCGTGGAACAAGCCATGGGCATCCAGAGCCAGGGAACCTCCCAGCTATCGGACATGATCGGACAAAGCAGTTTAGAACACCGAGGAGGCCTTACCTCATCTGAGACCAAAATGACCATTCAGAGAGCTTGCCGTGGAAACATCGCCTTCCTCGAACTGGACACCATGGGACGTTACATCACCATTGAGAACAACAGCAGCGGACGTAATGCCAAGGATCAAAGAATGGCTGGATGGAAAATCAAGAAGGTGATGGAGGGAAAAAGCACCCCACTCGAGTACAAGTTCCCGGACAATTTGGTTCTGTCGCCAGGCCAGAAGTTCAAGGTCTTCAGCATAATGGGCAATCCCTCGAAGTCCAGGGGCTCTGACCACGACACTACCGACTTCCAGACATGGGAAATGGGTCCATGCAAGACCTATCTGTATGATGACTCAAATAACGAAAAAGCCACTTGCTTTGCCCGATTCTCTCCCCACTAAACACACTCCAGACGACAAAGATTTACAACCATTCCAAGATAGACTAGCAGAAAGCATGCAACACCAGCTTTCTGTCAGTTCAAATTCTAGGACGTAGATTAGTACTAATGTTATTAATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTACTGTTTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00038	Filament	Intermediate filament protein	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001322	Domain	Lamin tail domain	Interproscan
IPR018039	Conserved_site	Intermediate filament protein, conserved site	Interproscan
IPR036415	Homologous_superfamily	Lamin tail domain superfamily	Interproscan
IPR039008	Domain	Intermediate filament, rod domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45721	LAMIN DM0-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005200	Molecular Function	structural constituent of cytoskeleton	Interproscan
GO:0005635	Cellular Component	nuclear envelope	Interproscan
GO:0005652	Cellular Component	nuclear lamina	Interproscan
GO:0006998	Biological Process	nuclear envelope organization	Interproscan
GO:0007097	Biological Process	nuclear migration	Interproscan
GO:0031507	Biological Process	heterochromatin formation	Interproscan
GO:0051664	Biological Process	nuclear pore localization	Interproscan
GO:0090435	Biological Process	protein localization to nuclear envelope	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf19_6.11 global RNA-seq network