Gene detail

Detailed information of CsqKR_Scaf19_3.16 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf19_3.16	NUCLEOLAR COMPLEX PROTEIN 3	chr8	27412863	27422107	+

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf19_3.16

ATGATAAATAATTTCTATTGTTTGTTTCAGAAAAATAAAGTGAAAGCCAAATCACCTAAAACGAGCAAAATCAAACTAGCCAACAAAAAACAATACAAGTTTGGTAAGCAGGGTATTACTAAGAAATTAAAACTCAAGCAGAAAAAGAAACTAGCTAGGAAGCTTCGTGATGCACAGGCAGGGGACCACAGCCTTAGAAAACAACATCAAGATGGAGAAGCTAATGCACATCAAGAGGAGGAGGAGCTGCCTTTGGAGGATCAGGATGTTAAGTTTTACTCAACACCTCTTCGTGACACAAGCTTTACTCACAGTCTAAATACGAGCTCTCTGAAAGAAGGTAAAGGAAATAAAAAGAAAAGAAAACAGGAAACAACAGATGATGAGGCACTGTATGAGAAAGTCCCAAGAATGCTTCCAGCCAATAAAAGAATGAAAATGCTGCTGCCCATTAAAGACCAGAATCGAATTATACCACAGATGATTGAACAAGATGCTGTACCAGAAGAAGAGGAGGAAGAAAATGAGACAAAAGAAAGTGATGCTGTACATGAAAATGGAGATGCTTCAGAGTCAGAGGAACCACTGCCAGCATTGTCAAACATAGAACTTTTTGTTTTGAGAAGAAGAAAACTGGCAGAGAAGAAACAGAAGATTGCTGTTTGTGCTTTTGCTGTGATGGAAAATCCACAAGAAAATATGAAGAAGCTACGTGAGCTATGTCTGATGTTGCATGAAGATGATCCTGGTATTTTTGTGACAGTTCGCTCATGGGCTATGGTGTCATTAGTTGATGTATTCAAAGATATCATTCCTTCATACAAGATACGTTTGCCAACAGACAAGGAAAAACAGCAGAAGATGGCAGCAGAAACTAAAGCATTACAGCAATTTGAAACAGCACTTTTACTAAATTACAAGAAATACTTGGAATATCTTGAATTTACGTCAAGAGGCAAGATAATGGAAATGTCAAGTAAAAAACCACAAAAGAAAAATGGACAGATTCATCATAATAATCTTCCAAAGCAATTATCAGCACTAGCTGTGAAGTGCTTAGGACAGTTGTTGATTGCTCATCCACATTTCAACTATGCAACCAACATCATCACAGTTTTAGTGCCTTTCATGAACAGAACTCAAGAGTTTTCAGACCGAGTTTGTGAAGATGTTAAAACCATTTTTCAGCAAGACAAAACAGGGGAAGTTACTCTGGAGATTGTTCGATGCATAGGCAAAATGATAAAAACAAGGAATTTTCAGGTGAAACCAAAGATTCTTGACACATTCTTGTCCCTGAAGATAAAAGAAATTGATTTATCATCCCAAGAACAGAGAAAGGATGGTGCCAGAAGAAAGGAACAGTTGTTAAAGATGTCCAGAAAACAGAGAAAACATCAAAAGCAACTGGAAAAACTTGAAGGTGAATTGAAGGAGATTAGAGCAACTGAAGATAAACAAAAGAAACTGAAATTGCATACAGAGGTGATGAACGCTGTGTTTGTAACATACTTCAGAATATTGAAACAAGCAAGACGATCTGGCCTGTTGGCTTCAGTATTGGAAGGTCTTGCCAAATTTGCCCATCTAATCAATGTAGACTTCTTTGATGACTTGTTTACTGTTTTCAAAGACATCCTTGAATCAGGAGAATTAAACTACAGACAAAGTCTTCAGTGCATCCAAACAGCTTTCACCATTTTATCTGGTCAAGGGGCAGCTTTGAATATTGATCCTATGAACTTCTACCGACATTTGTACAAGAAACTTCTCCAAATTCATGCAGGAAGTGAAAGTAAAGATATGTTGATTATTCTCAATTGTCTTGACCTGATGATAAACAAGAGAAAACGACAGGTTTCACAGCAGAGAATCTTAGCTTTTCTGAAAAGACTGTGCACCATCTGTCTGCAGCAACTACCACACTCAGTTTTAGGTATTTTGTCAGCTGTCCGCAGTTTGGTTCATAATCACAAGTACACAGATATTGTGTTTGATAATGAAGCTCAGGGGAGTGGAGTTTATCTGCCAGAACTTGATGATCCTGAACACTGTAATGCTCACAATTCCACACTATGGGAGATTACAACCTTGAGGAATCATTTTCATCCAGTTGTGCAAAAATATGCCTCTCATGTATCCAAGTTTTGTCCTTCAACTGGTGATGGTCAGCTTATTCCTGAACTGGCAAGACTATCTCCAATGACACTGTTCCAGAAATATGATATGGAAAGTGAAATATTTGATTTGAGTATACCACAGCAAATTAACAAACTTAACCGAAAGAGGCAGACACTGGAGTCATCAAATGATGTCATGAAGAAACACATGAAACAAGTGCTTGAAAAAGTTCCCGATTCATTACAAAACTTCTCTTTAAATATTTGTCTTTCTGACAATGGATAG

Transcript

CsqKR_Scaf19_3.16

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03914	CBF	CBF/Mak21 family	Repeat	Interproscan
PF07540	NOC3p	Nucleolar complex-associated protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005612	Domain	CCAAT-binding factor	Interproscan
IPR011501	Domain	Nucleolar complex-associated protein 3, N-terminal	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR016903	Family	Nucleolar complex-associated protein 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14428	NUCLEOLAR COMPLEX PROTEIN 3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0006270	Biological Process	DNA replication initiation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf19_3.16 global RNA-seq network