Gene detail

Detailed information of CsqKR_Scaf19_16.15 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf19_16.15	ATP-DEPENDENT RNA AND DNA HELICASE	chr8	26196971	26205132	-

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf19_16.15

ATGGCTTTAAGCATTTTCTCTAGATATTGTTTATATAGACGATTACAGTTGTTGATGCGGACTGTCACACCATGTGTTGTAAAACTAACGGCAAAGACACGTTTTGCTTCAAATAGAAGTAAAGATGGAAAAGATCTTAATTCTTTATTTCACCCATTGCCAGTACGACTGGCAAACAGTAGTGATGACATAAATATCGGTGCAGAACTGACATCAAAGTTAAAGAAAGAAGACCTGTTGAAAATCTTAAATCAGTTCTACAAACGAAAAGAAGTGAAACTTTTAGCAGCTGAAAATGGACTTGATAATCGTTTATTCCATGAGGCATACCTGAGTTTCCGTAGATTTTGTGTGGAATCAGAACATCTGCCAGTTGATCTGCATATTATCATCAGTGACCTTCTTCAGGAAGCAGGTCATGTTGATGATATATTTCCTTACTTTTTACGACATGCTCGTGAAATCTTTCCGCACTTGGAATGTATGGAAGATCTGAAGAAAATCAGTGACCTAAGACTTCCTGCAAATTGGTATCCAGAAGCAAGATCCATAGAGAGGAAAATCATTATCCATGCTGGTCCAACAAACAGTGGGAAGACCTACCATGCTCTGGAAAGGTTCTTTTCTGCCAAATCCGGTGTTTACTGTGGACCTCTTAAAATGCTGGCTCAAGAAGTATTTGTGAAAAGCAATAAAAATGGGACACCTTGTGACTTGGTCACCGGTGAAGAAAGACGTTATGCAAATCCTGATGGATCTTTATCAAACCATGTAGCTTGCACTGTTGAAATGACAAGTGTTACCATGCCTTGTGAAGTTGCAGTTATTGATGAGATTCAGATGATAAAAGATCAGCAGAGAGGCTGGGCGTGGACTAGGGCCCTGCTAGGAGTATGTGCTGAAGAGATTCATCTTTGTGGTGAGGCATCAGCCATAGACTTGGTCAAAGAATTGATGCTGGCCACAGGAGAAGAAGTAGAGGTTAGAAGATACAAAAGAATGACAAGTCTAGTATTCTTGGACAAAGCAGTAGAATCATTTGACAATATACAGGAAGGTGACTGCATTGTTTGCTTCAGTAAAAATGACATTTACTACATAAGTCGCCAGTTGGAACAACGCAAGATTGAGTGTGCTGTTATCTATGGTGGATTACCTCCAGGTACAAAAATTGCTCAGGCAGAAAAATTCAATGACCCAAATCATCCATGTAAAGTGATGGTTGCAACAGATGCTATAGGAATGGGACTCAACCTTGCCATCAAGAGAATCATCTTCTACACCATGGTGAAGCCAACAATCAATGAGAAAGGTGAGAAGGAGATGGATGTGTTAAGCACATCACAGGCTCTGCAGATTGCTGGGAGAGCAGGAAGATTTGGAACTGTCTTTGAGAATGGAGAAGTGACAACTTTCAAAAATAGTGACCTGCAGCTGCTGAAGGATGTTGTCAGTAAATTTATTGATCCAATTGAGCAAGCAGGTTTGCATCCAACAGCCGAACAAATTGAACTGTTTGCCTATCACTTACCAAATGCAACACTGTCAAATCTAATAGATATATTTATTACATTGTCTCAGCTGGACAGTGATAAGTATTTCATGTGTAACATGGAAGATTTCAAGTTCCTGGCAGATATGATAGAACATGTTCCACTCTCCCTGCGAGTTCGTTATGTCTTCTGTTGTGCTCCAATTCCTAAAAAACAACCATTTGTCTGCACCATGTTCCTCAAGTTTGCTAGACAGTTCAGCCAAAACCAGCCTCTCACTCTGGAGTGGATTTGTCGACAGTTAGGCTGGCCATTCACCCCACCTGGAACATTGTCTGATCTAGTACACCTTGAAGACATGTTTCCTGATTTTGAGCACATCCGAGATATGCAGAAAGAACTGGACTCCATCATTCAAGTAGGAGTGTACAACATCACTCAGCTCATCAAGGCTAGTGAGAGTCCAACAGCCAGTGGTACTCAAGACATGGAGGATGACTTCACAATGAAAAGTCTCAGCCAACGTAAACGCAACAAATTTGCTGACAAGATGGAATTTCAAGGTTCATCATTTGAACCGGGACAAAGACCAGTGTCACCTGACTCAGCTTATGATTCTCGACTGAACCGTGTAAACATAGGTCAAGGTCGTTTGACAGATCAGCTTATCAAACAAGGATTGCTCACAAAGGAGATTCTGGAGAAGCTGCAGCAAGAGTGGAGTGAAACTGGTAATGAACCAGACAGTGATAGTAAAAAGTAA

Transcript

CsqKR_Scaf19_16.15

GAACCAGTCAAAATGTACTGGGCACCTTCGATTTCAATGGTATCAGATATTGTTCCACCGAAATGAAAAAGACAAATAATAAATTGTTTGACTGTTAGTAATAATTAGCAACAGATGACAAGTTAAGCTACATGGCTTTAAGCATTTTCTCTAGATATTGTTTATATAGACGATTACAGTTGTTGATGCGGACTGTCACACCATGTGTTGTAAAACTAACGGCAAAGACACGTTTTGCTTCAAATAGAAGTAAAGATGGAAAAGATCTTAATTCTTTATTTCACCCATTGCCAGTACGACTGGCAAACAGTAGTGATGACATAAATATCGGTGCAGAACTGACATCAAAGTTAAAGAAAGAAGACCTGTTGAAAATCTTAAATCAGTTCTACAAACGAAAAGAAGTGAAACTTTTAGCAGCTGAAAATGGACTTGATAATCGTTTATTCCATGAGGCATACCTGAGTTTCCGTAGATTTTGTGTGGAATCAGAACATCTGCCAGTTGATCTGCATATTATCATCAGTGACCTTCTTCAGGAAGCAGGTCATGTTGATGATATATTTCCTTACTTTTTACGACATGCTCGTGAAATCTTTCCGCACTTGGAATGTATGGAAGATCTGAAGAAAATCAGTGACCTAAGACTTCCTGCAAATTGGTATCCAGAAGCAAGATCCATAGAGAGGAAAATCATTATCCATGCTGGTCCAACAAACAGTGGGAAGACCTACCATGCTCTGGAAAGGTTCTTTTCTGCCAAATCCGGTGTTTACTGTGGACCTCTTAAAATGCTGGCTCAAGAAGTATTTGTGAAAAGCAATAAAAATGGGACACCTTGTGACTTGGTCACCGGTGAAGAAAGACGTTATGCAAATCCTGATGGATCTTTATCAAACCATGTAGCTTGCACTGTTGAAATGACAAGTGTTACCATGCCTTGTGAAGTTGCAGTTATTGATGAGATTCAGATGATAAAAGATCAGCAGAGAGGCTGGGCGTGGACTAGGGCCCTGCTAGGAGTATGTGCTGAAGAGATTCATCTTTGTGGTGAGGCATCAGCCATAGACTTGGTCAAAGAATTGATGCTGGCCACAGGAGAAGAAGTAGAGGTTAGAAGATACAAAAGAATGACAAGTCTAGTATTCTTGGACAAAGCAGTAGAATCATTTGACAATATACAGGAAGGTGACTGCATTGTTTGCTTCAGTAAAAATGACATTTACTACATAAGTCGCCAGTTGGAACAACGCAAGATTGAGTGTGCTGTTATCTATGGTGGATTACCTCCAGGTACAAAAATTGCTCAGGCAGAAAAATTCAATGACCCAAATCATCCATGTAAAGTGATGGTTGCAACAGATGCTATAGGAATGGGACTCAACCTTGCCATCAAGAGAATCATCTTCTACACCATGGTGAAGCCAACAATCAATGAGAAAGGTGAGAAGGAGATGGATGTGTTAAGCACATCACAGGCTCTGCAGATTGCTGGGAGAGCAGGAAGATTTGGAACTGTCTTTGAGAATGGAGAAGTGACAACTTTCAAAAATAGTGACCTGCAGCTGCTGAAGGATGTTGTCAGTAAATTTATTGATCCAATTGAGCAAGCAGGTTTGCATCCAACAGCCGAACAAATTGAACTGTTTGCCTATCACTTACCAAATGCAACACTGTCAAATCTAATAGATATATTTATTACATTGTCTCAGCTGGACAGTGATAAGTATTTCATGTGTAACATGGAAGATTTCAAGTTCCTGGCAGATATGATAGAACATGTTCCACTCTCCCTGCGAGTTCGTTATGTCTTCTGTTGTGCTCCAATTCCTAAAAAACAACCATTTGTCTGCACCATGTTCCTCAAGTTTGCTAGACAGTTCAGCCAAAACCAGCCTCTCACTCTGGAGTGGATTTGTCGACAGTTAGGCTGGCCATTCACCCCACCTGGAACATTGTCTGATCTAGTACACCTTGAAGACATGTTTCCTGATTTTGAGCACATCCGAGATATGCAGAAAGAACTGGACTCCATCATTCAAGTAGGAGTGTACAACATCACTCAGCTCATCAAGGCTAGTGAGAGTCCAACAGCCAGTGGTACTCAAGACATGGAGGATGACTTCACAATGAAAAGTCTCAGCCAACGTAAACGCAACAAATTTGCTGACAAGATGGAATTTCAAGGTTCATCATTTGAACCGGGACAAAGACCAGTGTCACCTGACTCAGCTTATGATTCTCGACTGAACCGTGTAAACATAGGTCAAGGTCGTTTGACAGATCAGCTTATCAAACAAGGATTGCTCACAAAGGAGATTCTGGAGAAGCTGCAGCAAGAGTGGAGTGAAACTGGTAATGAACCAGACAGTGATAGTAAAAAGTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF18114	Suv3_N	Suv3 helical N-terminal domain	Domain	Interproscan
PF18147	Suv3_C_1	Suv3 C-terminal domain 1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR041082	Domain	Suv3, C-terminal domain 1	Interproscan
IPR041453	Domain	Suv3, N-terminal	Interproscan
IPR044774	Domain	Suv3, DEXQ-box helicase domain	Interproscan
IPR050699	Family	RNA/DNA Helicase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12131	ATP-DEPENDENT RNA AND DNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000965	Biological Process	mitochondrial RNA 3'-end processing	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006401	Biological Process	RNA catabolic process	Interproscan
GO:0045025	Cellular Component	mitochondrial degradosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf19_16.15 global RNA-seq network