Gene detail

Detailed information of CsqKR_Scaf19_16.11 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf19_16.11	GLUTAMATE SEMIALDEHYDE DEHYDROGENASE	chr8	26166660	26184867	-

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf19_16.11

ATGCAGACTGGTCAATATCACCAGCAAGTGAACCCGTACATGATGTGGCCATACATACAGATGTACCCACAAACATTGGATGAATTTTCTCTTCACCCGGCATTCATGCAGACTAGCATGCCGACGTACCCGGTGTTCTGTAGACCTCATGTTGCTAAAGAAACGGTGAAGCGGTCGTCGTTCACGATAGATGCGATTCTTAACAGCGACTTAAAGAGGACGGAGATAACTTGCGACACGTCGTCCTCACAAGACGGTGTCAGTGATAAGTTAGATAAAAAGTCTAACAGTAAAGGCAAACGAATCAGGACGATTTTCACACCCGAACAACTAGAGCGCCTGGAGGTCGAGTTTGAACGTCAGCAGTATATGGTGGGAACAGAGAGATATTACTTAGCGGCGTCTCTGAACTTAACGGAGGCCCAAGTGAAGGTGTGGTTTCAGAACAGAAGAATCAAATGGCGGAAACAGAATCTAGAACAGCAACAAGCGAAATTAGCTTCTCTCGACTTGTACAAAGACATGGAGTCAGATTCTGATAGCGAGGAGAGCGAAAGTCGAAACGTATCATTCACATCGGAAACAGTGTCTTCCATTGTTATCATGACTGTTCACAAAATACCGACAGGTCAAACGGCCACAGTACAGATTGTCATTGTGTGTAACGCTAGTTCTGCCATGTTGCGAGTTCACCGCATGACCCCGGCATGTCGCGCAGACTATCGATCGCTTTCTCCGTTAACAGCTGATGGAGGAGGTCATTATTTAGTACTCTCTGCGAGAAGAGGAGAAGATACAGAACCACTGAACCGTGCAGTTATGGTGACGTTCAGAATGTTTCGAGTAGTGAGGGTTTTCCAACAAAGTTCCTGTTTTCTGTGTGGCAGCAGAGTGGTCGTATCCCAGAAAACACAGGTAACGGACAAGAACTTGCTGCAGATCTCCGCCTTCACAACGAGCACGTCACATCACCAGATCGCTCTTCAGAGATCAGATCTTAGTGCTTCTAAACGAATTGTAGTCAAACTTGGTAGCGCCGTCATCACTAGGGAAGATGAATGTGGAATTGCACTGGGCCGACTGGCTTCTATAGTAGAACAGGTATCGGAACTGCAGAATCAAGGACGAGAGCTGATGCTGGTGACGAGTGGAGCAGTGGCTTATGGGAAACAAAGACTGCGACAAGAAATTTTTATGTCCAGGAGTGTCCGAGAAACCATGTACAAATATGATTACGGTGACGAAAGTGGCTTAGAACCCAGAGCTTGTGCAGCTGTAGGCCAGAGTGGTTTGATGTCGCTGTACGAAGCAATGTTCCAGCAGTACGGAGTAAGAGTTGCTCAGGTTCTCGTCACTAAACCAGATCTTCAGAATGAGCAAAGTTGCAAGAATTTACAAAGCACGCTGTTAGAGTTGGTTCAGCTGAACATCATCCCCATCATAAACGCTAATGATGCTGTAGCGCCACCACCTGAAGCAGACAAAGACCTCTCTGGGGTGATCAGTATAAAAGACAATGACAGCCTGGCTGCCAGAATGAGTGTGGAAATAGACGCTGACTTGATGATCATCATGTCGGATGTTGACGGTTTATATACACACCCTCCTGACCAGCCTGACTCGAGACTTCTACACACGTACTGTCCGGCCAGCAAGGAGACGGACATTGTGTTTGGAGAGAAATCACGTGTTGGTCAAGGAGGAATGGAGTCAAAGGTAGGAGCAGCGAACTGGGCTTTGAAAAACGGGGTGTCAGTTGTGATCTGCAATGGCTGTGAAGATAATGCCATCATCAACATTGTGAATGGAAAAAAAGTCGGCACTTTCTTCACAAAAGAAGATTTCATGGGAACTCCTGTTGAAGTTCAAGCAATGGACGCTCGTCATGGAAGTTATCAGCTCCAAGCTTTGAGTGGTTTGCAGAGAGCCGACATTATAAATCGTCTGGCAGATTTGCTCATTGAACGCAAGTCTGACATCCTTTCTGCAAACCAAGTGGACATAACTGAAGCACATGCCAATCGTAATCTGTCAACAGCAATGGTGGCTCGTCTGGTTCTCACTGATAAAAAGCTAAATACGCTAGCTGCTGGGCTGAGGCAGATCGCCCAAGATTCCGTCTCGTCTGTTGGACGTGTTATTAAGAGAACAAAGATCGCGGAGGATTTGATGTTGAAACAAATTACAGTTCCCATTGGTGTTCTCATGGTTATATTTGAATCAAGACCAGATGCCCTGCCTCAGGTTGCTGCACTGGCTATTGGCAGTGGAAATGGACTGTTACTAAAAGGTGGAAAAGAAGCTTTTCACAGCAACAAGATTCTTCATGACATTGTACAAGAGGCTCTGAGACCACTTGTGCCTGTTGAGACCATCTCACTGGTAAGCAGACGGGAAGACATAGAATACTTGTTACACATGAATGAATACATTGATCTTGTCATACCACGTGGCTCCAGTGAGCTTGTCAAGAAAATTGAAGAAGCCAGTAAAGGAATCCCAGTTCTTGGTCACAGTGAGGGTGTCTGCCATGTTTATCTTGACAAAGATGCAACATCTGAGATGGCCATAAGGATAGTTCGGGATTCTAAATGTGACTACCCTGCTGCCTGTAATGCCATGGAAACATTGCTGATTCACAAGTCATTACTTAATACTCCACTCTTTGATGAGCTGCTTGACATGCTACGAAAAGAAAAAGTCAAAATACATGCTGGTCCAAGGTTTGCTGGATGCCTCAAGTTCTGCCCCTCCCCAGTGTCTAATATGAAAAAGGAGTATGGTGCTCTTGAATGCACGGTGGAAATTGTGGATGACATAAATGAGGCAGTAGAACACATCAACAAATACAGCAGTTCTCATACAGACACAATTGTCACAAATAATAAGGAAACTGCACAGTATTTTCTGCAGGCTGTGGACAGCGCATGTGTCTTCCATAATACTAGTACCAGGTTTGCTGATGGCTACAGATTTGGACTTGGTGCTGAAGTTGGTGTTAGTACATCTCGAATCCATGCAAGAGGTCCAGTTGGGATAGAAGGACTACTAACAACAAAATGGGTGCTACATGGTGCAGGACAAGTTGTGTCCGACTTCCATGAAGGGAAACTGAAATACATTCATGAACCTCTTCCTGTGATATCAGACACTGAGGATGAGATATAA

Transcript

CsqKR_Scaf19_16.11

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	Homeobox

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan
PF00171	Aldedh	Aldehyde dehydrogenase family	Family	Interproscan
PF00696	AA_kinase	Amino acid kinase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000965	Domain	GPR domain	Interproscan
IPR001048	Domain	Aspartate/glutamate/uridylate kinase	Interproscan
IPR001057	Family	Glutamate/acetylglutamate kinase	Interproscan
IPR001356	Domain	Homeobox domain	Interproscan
IPR005715	Family	Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase	Interproscan
IPR005766	Family	Delta l-pyrroline-5-carboxylate synthetase	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR015590	Domain	Aldehyde dehydrogenase domain	Interproscan
IPR016161	Homologous_superfamily	Aldehyde/histidinol dehydrogenase	Interproscan
IPR016162	Homologous_superfamily	Aldehyde dehydrogenase, N-terminal	Interproscan
IPR016163	Homologous_superfamily	Aldehyde dehydrogenase, C-terminal	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR019797	Conserved_site	Glutamate 5-kinase, conserved site	Interproscan
IPR020593	Conserved_site	Gamma-glutamyl phosphate reductase GPR, conserved site	Interproscan
IPR036393	Homologous_superfamily	Acetylglutamate kinase-like superfamily	Interproscan
IPR041744	Domain	Bifunctional delta 1-pyrroline-5-carboxylate synthetase, glutamate-5-kinase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11063	GLUTAMATE SEMIALDEHYDE DEHYDROGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004349	Molecular Function	glutamate 5-kinase activity	Interproscan
GO:0004350	Molecular Function	glutamate-5-semialdehyde dehydrogenase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006561	Biological Process	proline biosynthetic process	Interproscan
GO:0016301	Molecular Function	kinase activity	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0016620	Molecular Function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf19_16.11 global RNA-seq network