Gene detail

Detailed information of CsqKR_Scaf194_27.11 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf194_27.11	ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER	chr4	11778548	11793848	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf194_27.11

GTGGATCCAGAGACAGATGGAGGATATATAGAAGATGATGAAGATTCAACAGAAGAAAATCAGTCTTATGAACAAAATAGACAACATTTATAGGGACACTATTTGGAGTGGGAAAATTGAACTTCGCGGTTTTGGTTTTCAAGTTCAAGATCTAAGGATCCACGAAGCTGAGACAGTGGGAAAAGTCCATTACAATAATCCTATACATTGGCAGACCAGAGATCTCCTAGAGGTGTTCAGCAGAGATATGTATTTCTCACGGTTTTGTTTGGCTCATCTGTTCACATACCAGGCATTCGAGGGCGGGATTCTTGGCCTCGCCTACATAGCATCCCCCAGGATGGGTACTATCGGGGGCATCTGCTCATCAAGTCAGTTTAAGAACAGGTCACACATGTAAACACAGGGTTTAGTATTTATAGATATATATATTTATCTGTATCTTTCTCTTTATATAACCCTTGTTCATGTGAGTAGGTTGGTCACAACTGGGGCAGTGAACATGATGTTGACAACAGCGAATGCGCACCATCTTCCTTTCACAACGGCAAATATCTCATGTATCCATACGCTGTTAATGGATTTGAAGAAAATAATTTGTTATTTTCTCCATGCAGTAGAAGATACATAGGCGAAGTGATTCGTGCAAAGGCCTACAAATGTTTTTCAGAAAAAGATAACAATATTCCTCTCTGTGGCAATGGCAGAATTGACCGGGGGGAGGACTGTGATGGGGGAGAGCAGGCCAGGAATGGACTGGATCCTTGTTGTACCTCAGAATGTAAATTTAAAGGAGGAGCCAGATGCAGTCCTATGAACTACGAGTGTTGTGAAAAATGTCAGATGGCAAGTCATGGATTCCCGTGTAGGGGAGACACACACTACAGCTGTGTCAAAGCAGCAGTTTGCAGTGCAGTTTTGATTGTCCAAAAGCAGAAAAAGAATGATACAACACCATGCCTTGAAGGAGGTCAGTGTTTCAATGGACAGTGTTTGTCTTACTGTGAAGTTCAGGACAGAAATTTGGTTTCGTGTCAGTGCGACGGAGATGCTAAGCAGGCGTGTCGCCGATGCTGCCGAAGACGGGAACCAGGAAGTAAGTGTGAGCCGCAGGGAACAGCGATACAGATGAAGGGACGACCGTGTTACCTTGGTTTCTGTTCCCAGAATGGAGAATGTGTAAAACCGAAGTCTAAGTTGGTAGAGAGATTGTTTGATGTTATAGAAAAACTTACTTCTAGTCAGCTTGTTGCGTTCATGAGAAGTAATATTGTTGGAACAGTAATTGTGTTTTCCATGGTGATATGGATTCCAGCTAGCTGGGCTTTCAGCTGTGTGGATAAACATCGACAGAAAGTGGAACGAGAGAAACTTCGCTGGAGAAGCAGAGAGAGTCATGACTTGTTTTCGAGTCTGGATGCAGCTACATGGAACATCAAACCATCTCGCAGAATACGTCTGAATCGGCCAGGAAACCCCCCCACCCACCGACAGCTCTCCCAGTCGAATCCCTCAGTGTCTTCTGCTGGGGAAAAAGAGACAAGTGTGTAACAGCAGGACGTTCAAGAGAGACAATCGCTTAAAGATGCCTGTTAATGGAAGATAAGTGCTTAAAATACGAATGAAATCCTGATGTAGTGTATTAAAAGGAAGTAATATTAATCACCGTTGATAAAGATTGTGATTAAGGGAGATAATTTACAGCAAAAGAGTTTTGTTGAAGGGAGACTACTGAAATTGTGCCGTTTGAAGTTATTATTTTAATCGAATGGAAACAATAATTTCTGTAAATAATGTTAAGAAGGGAAAGAACTATAAAAAGTATTTTTAATTAATGTGAAAGAAATGTTCAGTAATCTTAGTGAAATAATAGTAATATTATTAGAAAGGGGGACGACTGTGAAAACTTCTCATTAAAACAAAAGGGGAATAACTGTAAACATTCTTTAGAAAGGGGGACAACTGTGGAAGTATTCTTAAAATGAAATGGGAAAATTACTGTAAATGTATCGTTTATAATAAAAGGGGAGACAACAGCAAAAGCTTTTTTTAAAATGAAAGTAAAACCACTCTCTTACCGGTTTTAAAAACACTGCCATTTTGACAATTGTAAATTTAGACAGGTACATTTTAGAATGTACAGCTTGGAGAGTGAGAAGAAAACTAGATTTCTGTAGGCTTAGTTGTAGGTTTTGTAATACTGATCATGTTTCAAAGTAGTGAGAAAATCTTGTTATATTTTTATAATTATCATTTTTAATGTTTTGTATTACGGTTTCAAGAGAGATTCTGTATTTTTCTGTGGGAGAGAGAGAAAAAAAAATTATGTTGATGAAATGTGTTATGCTTGTTAGAAAAATGAAAATTCTTATCTTTCATTTTTTTTAACTTACACCAATAAAATCAAAATCCATTCCGAAAACATTAAATAATAACTATAATAATTAAATAGATAAATTGATAAATAAAAATACACAAGTGAATTAGCAAATAAAATAAATAATTTTACAAAGTTAATATTAAAATACTGTAATTAAAAACATAATAACAAAATGTAAAATAATGATAAATACAAATTATTAATTATATTAATGTTATTACTGTGATTAGGAAAAATAATAAATTTTATACAGTTTTGTTTATCAAAAATAACTGATAAAATTTTATAACTTAAACCTGATGCTTTAAATACTTTATAATCAATATTTTCTAAGTGATGCTATATGTGCTTATATTACTTACATATACAAATGCATACCATTAGCCATATTCAAATCAAAAGATAATACCATGACTTTTTAAATTATTTATTAATCTATACAAAACCACCAGCTTTTTGTGTGTGTGTTTGTTTTCATTTTTTTTTCATAATTTTTAGCAAAGTGTAAAATGACTGATACATATTGGTGAAGTATCCTTTACTGGAAAAAAATCTGGAATTTTAAGTGTTAAAATAATTTCTGAATATGACATGATAGTTGGAGAAAAAGAGACCCATGTTTAATCACAAAAAACACATTTAATTCTTTTGAGAGCATATTTGACATAATACACACTCTTTTAAGTGCTATGCACTTGGGAAAATTATCTGTTTTCACTCCAAATATATATAAAAAAACAAACAATATTACATCAAGATATCCATTTAAATAAATAAATAAATAAATAAATAAATCTGGATTTCTGTGATTTTCAGATTTCCATTAACTTTATTTTATTATT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00200	Disintegrin	Disintegrin	Domain	Interproscan
PF16698	ADAM17_MPD	Membrane-proximal domain, switch, for ADAM17	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001762	Domain	Disintegrin domain	Interproscan
IPR024079	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR032029	Domain	ADAM17, membrane-proximal domain	Interproscan
IPR036436	Homologous_superfamily	Disintegrin domain superfamily	Interproscan
IPR051489	Family	Disintegrin and Metalloproteinase Domain-Containing	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45702	ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004222	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006509	Biological Process	membrane protein ectodomain proteolysis	Interproscan
GO:0007219	Biological Process	Notch signaling pathway	Interproscan
GO:0008237	Molecular Function	metallopeptidase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf194_27.11 global RNA-seq network