Gene detail

Detailed information of CsqKR_Scaf191_5.20 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf191_5.20	STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER	chr2	2277251	2285749	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf191_5.20

GGACCACATCGTTGTGGACAGCATCAACACTGCTCAGAAGTGTGTGGAGTTCCTGAAGAAAAACAACGTTGGGGTAGCAACGTTTATTGGACTTGAGAAAATGTCGAAATGGATTGAACACACCAGAAGAAAAATTGATACACCAGAATCAATTCCACGACTCTTTGATTTGGTGAAAGTAAAAGATTCTTCCATTCTGCCTGCGTTCTATTTTGCTCTTCGGGACACTCTTGTTGCTAATGACTTGGACCAGGCCACAAGGATTGCCTACGGCAAGACTCGATACAGAGTGGTCACTCTGAAAGGACAGTTGATTGACCAGTCAGGTACAATGAGTGGAGGAGGTACCTCCTTGTGTAGGGGCAAGATGGGTTCCTCATTATCCAGTGATGCTGTCGATCCAAAGGAGCTTGCCAACATGGAGAATAAACTGGAAAAAGTAACCATGGAAACCCAGCAGTGCCGGTCGAATAAAGAGAAACTGGAAGACATGATTGGTCAAAATGAAAAAGCCTTCACACAGATGAAACACACTCAGGAGAAATACAAAATGGAGATAAAGGCAATGACAGAGCAGGTGTCTGCACTGAAGGTTCAGTTGGCTGAACAGGAGGAGAGAGTGAAAGCAGCAGCACCAGACAAGAAACACTTGAAAGAGCTGGAGAAGAAAGTCGCAGAATACAAAGCAGATTATGACAAAATTGCAAATGTGGCTTCAAAAATTGAAGATGAAGTTCAAAGTCTGCACAAACAAATCATGGATATTGGAGGTTCAAAGCTGCAAGCAGTACAGTCGCGAGTAGACGCTATATCAAACAACATTGACGAAGTGACAGGGCAGATAACTAAAGCAAATGTTGCTGTTAAAACAGCAGAAAGGAATTTAAAGAAAGTGGAAGACAAAGTAGCATCTGTTGAAGAAGAGATTGTTGAAAGTAATCAGAAGATGACGGAACTGAATGCACAGCTCAAGTTACTGGAAGATGATGCAACTCAGGTGTTGGAAGCCTATCAGAAATTACAGGACGATATAAAAATTATTGAGGAATCTCTAAATGGTATAAAAAAGGAGCTACAGAAACTTGAAGATGAGGAAAATAAATTACAGAAGGAAACTATTGATGTCAGACACGAGGTGGAGCGATTTGAAAACTTGGTAAAAAGAACCAAGAAAAAGTTGAATATTGGAAAAGAGAGCTGAATAATTTGAAAATGCACAGTATTAACAATGAGGAGACACCTAAACTTGTTGTGTTGTCTGAAAAAGATTTAGAAAGTATCAACAAAGCAGATGTACAGTACGAAATCACAGTTTTAGAGGAACGACTGGCAGAAATGAAGCCAAATATGGCAGCTATTGGAGAATACAGGAAAAAAGAAGAACTTTACCTGAAGCGAGTGGACGAACTGGATGAGATCACTAATGTCAGAGATCAGCAGAGGAAGTATTACGAAAGTCTGAGGAAACAGAGACTGGAGGAGTTCATTACTGGCTTCAGCATGATTACAAACAAGCTGAAGGAGATGTATCAGATGATTACACTAGGAGGAGATGCTGAGCTCGAACTTGTCGATTCCTTGGATCCTTTCTCAGAGGGCATTGTGTTCAGTGTTCGACCACCCAAGAAATCGTGGAAGAACATTTCTAATCTGTCAGGGGGTGAGAAAACGCTGAGTTCTCTCGCACTCGTGTTCGCTTTGCATCATTACAAACCCACACCGCTCTACGTCATGGACGAAATAGATGCTGCTCTCGATTTCAAAAACGTCTCCATTGTCGCAAACTACATCAAGGAACGCACTAAAAACGCTCAGTTTATCATAATCTCACTGAGAAATAACATGTTTGAGTTAGCTGATCGCCTCGTCGGAATTTATAAGACAGACAACTGCACCAAATCCACGACAGTAAACCCAGACAAACTGCAACTACTGCAGCAGCAGAACACTGTCAATTAATATACTGTTCACTGCGTCACCTCAGATAAAAGAGCTTGAATCTAGATGCATTGTTTAAACGATTTGAGTTGTAAGACGTCGCAATTCTGTTTGTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06470	SMC_hinge	SMC proteins Flexible Hinge Domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010935	Domain	SMCs flexible hinge	Interproscan
IPR036277	Homologous_superfamily	SMCs flexible hinge superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18937	STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000799	Cellular Component	condensin complex	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005694	Cellular Component	chromosome	Interproscan
GO:0007076	Biological Process	mitotic chromosome condensation	Interproscan
GO:0051276	Biological Process	chromosome organization	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf191_5.20 global RNA-seq network