Gene detail

Detailed information of CsqKR_Scaf180_3.7 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf180_3.7	MYOSIN HEAVY CHAIN, NON-MUSCLE	chr6	7726340	7743027	-

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf180_3.7

ATGGACTACGATTCCGACGTCAGCCACAGCATTTCCAAGCGAACGATAACACGGACGTACAATGTGTACCGTGGAACTTCACCGGCTACGCAAAACAGGCTCGAGGCCAGAATCCGGGAGCTTGAGGATATGGTTGATTTCGAAAGAGATGCTCGTGTCCGGGCTGAAAAACAATTTGCCGAGACACTTTTCCAGCTGGAACAAGTTCAAGACAGACTGGATGAACAAGGAAGTGTTTCGATACAACATCTGGAAATTGCAAAGAAGCGCGAGTCTGAGCTGTCCAAACTTCGCAAGGATCTCGAGTTGGCAATCATGTCCCACGAGAGCGCTGAGCAGAGTCTACGCAAGCGACACAACGAGACTGTGAACGACTTGACTGATCAGCTAGAGTACGTCACCAAGCAGAAGAACCGAGCAGAGAAGGAGAAACAGCAGCTGATCATTGAGATCGACAGTCTTCAGACTCAGGTCGATTCCCTCGCAAAGGCCAAAGCTTCAGCGGACAGCAAACTCGACTCCCTGGATGCCTCCAACAGAGCTCTGAAGGGTCAAGTTGATGACCTCACCAGACAGCTCAACGAAAGCAACGCATCCCGCACACGTCTGACTCAGGAAAATTTCGATCTTCAACACCAAGTTCAGGAACTTGACAGCGCTAACCAGGCTCTCGCCAAGGCCAAGTCTCAACTACAGGCCCAGCTGGACGACATGAAGCGCAGCTTGGATGATGAATCAAGGCAACGACAGAATCTCCAGGTGCAGCTACAGGGTCTCCACGCTGACTACGACAACCTGAACGCCAGATACGAAGAGGAATCTGAGGCAGCCAACTCTCTGCGCCAACAAGTCTCCAGAATAAGCGCAGAGTACTCTGCCCTCAAAGCCAAATTCGACAAAGAAATCCTCGCCCGCCAAGAAGAGCTTGAGGACACCAGACGCCGACTAAATGCCAAAATTGCAGAGCTGGAAGGTGAAAACGACACTCTCCGTGCTCGCTGCAGCAATCTCGAGAAAACCAAAAATAAACTGTCTGCTGAAATCAAGGAACTCACCATCGAAATAGAAAACATCCAAATCATCGTACAAGATCTGACAAAGAGGAACAGGCAGCTGGAGAACGAGAACGGTCTGCTGCAGAAGAGGTGCGACGACCTGACCGCCGAGAACAACGCACTGCGCGCAGACAAAGCCAACTTGGAGGCTGAAATTCACAGGCTGAAAATTCAGATCGCCGAACTCACTGAGAGAAACGACAATCTGCAGAGAGAAAACAAGAATCTCTCAGATCAGCTACGTGAGGCTCAACATGCTCTGAAGGACGCCAACCGCGAGCTTGCTGACCTCAGACAGCTACGCGCCCAGCTTGAGGCTGAACGCGACGCCCTGGCAGCCTCTCTGAGAGACACCGAAGAGGCTCTCCGTGATGCCGAAAACAAACTGGCCAACGCCCAGAACGCCCTGGCCACTCTCCGAAGTGAGATGGAGAACAGACTGAGAGAGAAGGATGAAGAGATTGAGAATATCAAGAGAAGCAGCGCACGTGCTATTGATGAACTCCAGCGAACCCTGATCGAGGTGGAGACCCGGTACAAGACGGAGATCAACAGAATCAGAAAGAAGTACGAGACCGACATCCGGGAACTTGAGGGTGCCCTTGACAACGCCAACAAAGCTAACGCCGAGTACCTTAAACAGATCAAATCTCTTCAACAGCGAGTCAAAGAACTCGAGGTTCTTCTGGACGAGGAACGTCGTTTGGCTGATGACCTCCGCGGCCAACTTGCCATATCTGAACGAAAACGCATCACAGTCACACAGGAACTGGAAGACGTGAGATCCATGCTTGAAGCGGCTGAGAGAGCACGCAAAAATGCCGAGAACGAGTTGGCTGACACGTCATCACGCCTCACTGAAATCAGTCTCCAGGTCACCGTCCTCACCAACGAGAAGCGACGCATGGAGGGCGACATTGCTTCCATGCAGGCCGACTTGGACGAGGCAATCAACGCTCAGCGCGCTGCCGAGGAACGAGCCGACCGCCTTCACCAGGAGATGTTGCGTCTCGCCGATGAACTTAGACAGGAACAAGAGAACTACAAGAACGCCGAATCCCTCCGCAAACAGCTTGAGATTGAAATCCGTGAAATTACCGTCCGACTGGAAGAAGCTGAAGCTTTTGCCCAGAGAGAAGGAAAGAGAATGGTTGCCAAGCTGCAAGCCAGGGTTCGTGATCTGGAAGCCGAACTGGAAGCCGAACAACGCCGTGTTAGGGAAGCCATTGCCAACATGCGCAAAGCAGAACGCCAGTACAAAGAGGCTATGGCTTTGGCTGAAGAAGATCACCGAATGGTGGCCGAGCTTCAGAGCGTCAACGACCAACTCAGTCTTAAAATAAAAACGCTTAAGAGACAGATTGAGGAGGCCGAGGATGTAGCCAATCTTACAATGAACAAATACCGCAAAGCTCAGCAAATAATCGAAGATGCCGAGCACAGAGCCGATCTCGCCGAAAAGAACCTCGGCGCTGTTCGCAGAGCCCGATCAATGTCCGTGACGAGAGAAACTCACATGAGAATTGTCAAGATGTAA

Transcript

CsqKR_Scaf180_3.7

GGCGTATCGGGTTACCTCGCCAGGAACATTCTTCCAGCGAGCGCGCCCTCTAGCGGAAGCGTATTTACGTATATATTGCTATGTATAGGGTATTTAAGGAATTTTGGATCGGGCGTTCTGTTCAGTCCGCTTTGCGTTACGTTGTCAGGCAGAACCGGTGTTGATCTTGTGGTTTGTGTCTCAGAACCTTTTCGACCTTACCATAGCGTTGTTGTGATCTTCAGTCGTGCCCCAAACCCGCCGCCAATATGGACTACGATTCCGACGTCAGCCACAGCATTTCCAAGCGAACGATAACACGGACGTACAATGTGTACCGTGGAACTTCACCGGCTACGCAAAACAGGCTCGAGGCCAGAATCCGGGAGCTTGAGGATATGGTTGATTTCGAAAGAGATGCTCGTGTCCGGGCTGAAAAACAATTTGCCGAGACACTTTTCCAGCTGGAACAAGTTCAAGACAGACTGGATGAACAAGGAAGTGTTTCGATACAACATCTGGAAATTGCAAAGAAGCGCGAGTCTGAGCTGTCCAAACTTCGCAAGGATCTCGAGTTGGCAATCATGTCCCACGAGAGCGCTGAGCAGAGTCTACGCAAGCGACACAACGAGACTGTGAACGACTTGACTGATCAGCTAGAGTACGTCACCAAGCAGAAGAACCGAGCAGAGAAGGAGAAACAGCAGCTGATCATTGAGATCGACAGTCTTCAGACTCAGGTCGATTCCCTCGCAAAGGCCAAAGCTTCAGCGGACAGCAAACTCGACTCCCTGGATGCCTCCAACAGAGCTCTGAAGGGTCAAGTTGATGACCTCACCAGACAGCTCAACGAAAGCAACGCATCCCGCACACGTCTGACTCAGGAAAATTTCGATCTTCAACACCAAGTTCAGGAACTTGACAGCGCTAACCAGGCTCTCGCCAAGGCCAAGTCTCAACTACAGGCCCAGCTGGACGACATGAAGCGCAGCTTGGATGATGAATCAAGGCAACGACAGAATCTCCAGGTGCAGCTACAGGGTCTCCACGCTGACTACGACAACCTGAACGCCAGATACGAAGAGGAATCTGAGGCAGCCAACTCTCTGCGCCAACAAGTCTCCAGAATAAGCGCAGAGTACTCTGCCCTCAAAGCCAAATTCGACAAAGAAATCCTCGCCCGCCAAGAAGAGCTTGAGGACACCAGACGCCGACTAAATGCCAAAATTGCAGAGCTGGAAGGTGAAAACGACACTCTCCGTGCTCGCTGCAGCAATCTCGAGAAAACCAAAAATAAACTGTCTGCTGAAATCAAGGAACTCACCATCGAAATAGAAAACATCCAAATCATCGTACAAGATCTGACAAAGAGGAACAGGCAGCTGGAGAACGAGAACGGTCTGCTGCAGAAGAGGTGCGACGACCTGACCGCCGAGAACAACGCACTGCGCGCAGACAAAGCCAACTTGGAGGCTGAAATTCACAGGCTGAAAATTCAGATCGCCGAACTCACTGAGAGAAACGACAATCTGCAGAGAGAAAACAAGAATCTCTCAGATCAGCTACGTGAGGCTCAACATGCTCTGAAGGACGCCAACCGCGAGCTTGCTGACCTCAGACAGCTACGCGCCCAGCTTGAGGCTGAACGCGACGCCCTGGCAGCCTCTCTGAGAGACACCGAAGAGGCTCTCCGTGATGCCGAAAACAAACTGGCCAACGCCCAGAACGCCCTGGCCACTCTCCGAAGTGAGATGGAGAACAGACTGAGAGAGAAGGATGAAGAGATTGAGAATATCAAGAGAAGCAGCGCACGTGCTATTGATGAACTCCAGCGAACCCTGATCGAGGTGGAGACCCGGTACAAGACGGAGATCAACAGAATCAGAAAGAAGTACGAGACCGACATCCGGGAACTTGAGGGTGCCCTTGACAACGCCAACAAAGCTAACGCCGAGTACCTTAAACAGATCAAATCTCTTCAACAGCGAGTCAAAGAACTCGAGGTTCTTCTGGACGAGGAACGTCGTTTGGCTGATGACCTCCGCGGCCAACTTGCCATATCTGAACGAAAACGCATCACAGTCACACAGGAACTGGAAGACGTGAGATCCATGCTTGAAGCGGCTGAGAGAGCACGCAAAAATGCCGAGAACGAGTTGGCTGACACGTCATCACGCCTCACTGAAATCAGTCTCCAGGTCACCGTCCTCACCAACGAGAAGCGACGCATGGAGGGCGACATTGCTTCCATGCAGGCCGACTTGGACGAGGCAATCAACGCTCAGCGCGCTGCCGAGGAACGAGCCGACCGCCTTCACCAGGAGATGTTGCGTCTCGCCGATGAACTTAGACAGGAACAAGAGAACTACAAGAACGCCGAATCCCTCCGCAAACAGCTTGAGATTGAAATCCGTGAAATTACCGTCCGACTGGAAGAAGCTGAAGCTTTTGCCCAGAGAGAAGGAAAGAGAATGGTTGCCAAGCTGCAAGCCAGGGTTCGTGATCTGGAAGCCGAACTGGAAGCCGAACAACGCCGTGTTAGGGAAGCCATTGCCAACATGCGCAAAGCAGAACGCCAGTACAAAGAGGCTATGGCTTTGGCTGAAGAAGATCACCGAATGGTGGCCGAGCTTCAGAGCGTCAACGACCAACTCAGTCTTAAAATAAAAACGCTTAAGAGACAGATTGAGGAGGCCGAGGATGTAGCCAATCTTACAATGAACAAATACCGCAAAGCTCAGCAAATAATCGAAGATGCCGAGCACAGAGCCGATCTCGCCGAAAAGAACCTCGGCGCTGTTCGCAGAGCCCGATCAATGTCCGTGACGAGAGAAACTCACATGAGAATTGTCAAGATGTAAATTATATAGATGCCGTTCATTCTTTCCCCAGTAGACCACGTCCCGAATTCAGAATAAATAAATAAATAAAAATTAAAAAAAAAAATAAAAAAAAAAAAAAAATTAAAAATTAAAATTATAAATAATAAATTAAAAATTGTAAATTAACTTTCATATTTATGGCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01576	Myosin_tail_1	Myosin tail	Coiled-coil	Interproscan
PF02183	HALZ	Homeobox associated leucine zipper	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002928	Domain	Myosin tail	Interproscan
IPR003106	Domain	Leucine zipper, homeobox-associated	Interproscan
IPR014751	Homologous_superfamily	DNA repair protein XRCC4-like, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45615	MYOSIN HEAVY CHAIN, NON-MUSCLE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000146	Molecular Function	microfilament motor activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0016459	Cellular Component	myosin complex	Interproscan
GO:0016460	Cellular Component	myosin II complex	Interproscan
GO:0032982	Cellular Component	myosin filament	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0051015	Molecular Function	actin filament binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf180_3.7 global RNA-seq network