Gene detail

Detailed information of CsqKR_Scaf17_5.49 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf17_5.49	SYNAPTIC ADHESION-LIKE MOLECULE SALM	chr6	36975422	36995749	+

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf17_5.49

ATGGCTTCTCTAAAGTTTGAGCACTGTCTTATAATTGGAGGATGTGGATTCTTGGGTCAACACTTGTGTGAAGCTTTACTTGAAAAAGGTTACAAAGTTTCAGTCTTTGACATCCGCAAAAGTTTTGAAAATGAGAAAGTCAAATTTTATATTGGAAATTTGTGCATCAAGCAAGATCTGCTTGAAGCTCTGGTAGGAGTAGACTGTGTCTTTCACTGTGCTACAGTTTCTCCTCTAAGCAACAACAAGGAACTATTCTTCAAGGTTAATTATGAAGGTACTAAAACTGTCATTGAAGCATGCAAGGAAGCAGGAGTGAAGAAATTTGTGCTAACAAGTAGTGCAAGTGTTGTGTATGAAGGTAAAGACCTCAGCAATGCCACTGAAGACCTTCCTTATGCAGTAAAACCACTTGATTATTATACTGAAACAAAGATACTGCAAGAAAAGAATATGGTAAATAAATCGGTAGCATCATCAGACTGTAGTCCTATTGTGAACACTATTGATCGGATCAGATGCACTGGGCCGAATCTGAAAAACATTACAAGAAATGCTAAAGCACTGATTGTAAATGGAATACCATCTAATCCCATTCGTCTTAACAAAATTAACAGAAGTATCTTCACAGGCCTCAATTTAACTGAAATATTTATTAGTTTCACAGATTTAACAGATGTAGACGAAGATTCATTTCAGGATTTAAAACAGCTCAGAAGAGTTGTTTTGAAAAACAATCAGATTGGAAAAATACACAAAGGAACATTTCATGGTTTGAAATTTCTAGAAATGATAGATCTTTCTGGTAATGAGTATTGCCATATAGAATCTGGAGCCTTCTCAGGATTGAATTCTTTGAGGCATTTGTATTTGGGAAACATGAAACTGGGATCACTCGATGAATCTTCATTTCAAGGTTTGAATTCACTTATTGATTTTGATTTACATGGTAATAATTTACAACATCTAACAAACAGTATCATCTCCAGTTTTCCTAAATTACAATCACTGGACCTGACATCAAATAATTTGAAAACTCTTTCTAAAGACTTAAAGCCAGCTTTGACTAGACTACGTCATGTCTCACTGTCAGATAACCCATGGCAGTGTAACTGTGATTTAGAATGGATGAAGAATTCTACCAATTTGACTGTTACTGAGAACAGACAGCATTATTTTGATATGATCATTTGTTACGGACCATCCTCTCTTCGGTATCGCCCTCTGATTGATGTACCTAGATCGGAAATGCCTTGCATTCCACCAAAGATAATACAGTGTGGAGGACCTTATGAAGTGACCGAAGGAAGAAATCTTAGATTACATTGTGAAGCAAAAGGAGATCCATTTCCTGACTTCATCTGGAAGTCTCCTTCTGGTTTGAGCATTAACAGCAACAAACAAACAGACAGATATGTAACTATGGACAATGGAACATTGCTTATATTGGCTGTAAATTTGCATGTAAATGGTCATTGGACAGTTCTGGCTCATAATAATGCAGGAAATGACAGTTCCAGCTTTGAAGTTCATGTACAAAAAAAGAACAACAAAAACAATGAAATTTATCTGATTGCTGGAGGTGTTGGGGCAGGTACTTTGCTTACTGCAGTTACCATTATAACAGTGATATTTGAATCATTAGCATCATCAGACTGTAATCCTATTGTGAACACTATTGATCGGATCAGATGCACTGGGCCAAATCTGAAAAACATTACAAGAAATGCTAAAGCACTGATTGTAAATGGAATACCATCTAATCCCATTCGTCTTAACAAAATTAACAGAAGTATCTTCACAGGCCTCAATTTAACAGAAATATTTATTAGTTTCACAGATTTAACAGATGTAGAAGAAGATTCATTTCAGGATTTAAAACAGCTCAGAAGAATTGTTTTGAGAAACAACCAGATTGGACAAATCCACAAAGGAACATTTCATGGTTTGAAATTTTTAGAAATGATTGATCTTTCTGGTAATCAATATTGCAGTATAGAATCTGGAACCTTCTCAGGATTGAGTTCTTTGAGGCAGTTATACCTGGGAAACATGAAACTAAGATCACTTGATGAATCTACATTTCAGGGTTTGAATTCACTGTTAATGTTAGACTTGCATGGAAATAAATTGCAGTCCATTCCAAATAATGTCATTTCCAGTTTTCCTAAATTACAGTTACTGGACCTGAAATCAAACAATCTGAAAACTCTTTCTAAAGATTTAAAACCAACTTTGATTAGAATTCATCATCTCTCACTGTCAGATAATCCATGGCAATGTCACTGTGATATGGACTGGATGAAGGAACTTAACAATTTGACTTTTTTTAGAAACAGAAATCATTATTCTGAAATGATCATTTGTTATGAGCCTATGAATCTGCAATATCGTCCTTTATTTGATGTACCGTCATCAGAATTGATCTGTATTCCGCCAAAGATAATTCAGTGTGGAGGACCGTATCATGTGATGGAAGGAAGCAGTCTTGCAATTCACTGTGAAACAAAAGGATTTCCATTTCCTGATTTTACTTGGCTGTCTCCATCTGGACTGAGTATTTCCAGTAATAACAAGAAAGACACCAGTGGATTTGTGACCACAGATAATGGAACTCTGGTCATTTCAGTAGTGACCGTCACCAGCAGAGGTATTTGGAAGGTGTTGGCCAAGAACAGCAGAGGAAACGATAGCTCAGGGTTTGAAGTTAATGTTCAAGCTGTAACAACTGTAACAACTGTAACAACTGTATCAGCTGTTGAGATAAATACTGGAGAAAAGAAGAAGACAGATGACAATTCTATGATACTGATCGCAGCTGGAGCTGGGGGAGGTGGTTTTCTTCTTATTGTTACCATAACAGGATGTTGCCTTTACCACCAGAGTAAAAATAATAAAGAAGTACTGAAGGCAAACTCTTCAGATTTCTTCACAGTTGCACTTCGTCCTCATGGAATATTTGGACCAAGAGACCCACATTTAGTACCAACCACAGTAGAATTGGCCAAAGCTGGCAAAAATAAATTTATTGTTGGTGATGGGAAAAACGTGGTTGATTTTACATTTGTTACTAATGTTGTCCAAGGTCACATTCTGGCTGCTGAACAAATTGGACCCAATTCACAAATTAATGGAAATGCATATTTCTTGACAAATGATGAACCGTTATTTTTCTGGACATTCCTGTCAAAGATCTTAGTTGGACTTGGCTACAAGGCCCCAAAATACCACTTACCTTTCACTGTCATCTATTTTATAGCTGTCGTTATTCAGATGTTCTGTGCACTGTTGAAACCTTTCAAGGAAATCCATACCTCTATAACACCCTTTGCAATTTGTGTTGCTGCTACACACCACTTCTACTGCTGTAAAAAAGCAATCACTGAATTAGGTTACAAACCTTCGGTGTCAGTTGAAGAAGGAATTCAGAAAACTCTTGAATATTTCTCATATTTAAAAAAGGAGACAGATGATGTTAAGGAATAG

Transcript

CsqKR_Scaf17_5.49

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01073	3Beta_HSD	3-beta hydroxysteroid dehydrogenase/isomerase family	Family	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF13855	LRR_8	Leucine rich repeat	Repeat	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000483	Domain	Cysteine-rich flanking region, C-terminal	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR002225	Domain	3-beta hydroxysteroid dehydrogenase/isomerase	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR050467	Family	Leucine-rich repeat and fibronectin type-III domain-containing	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45842	SYNAPTIC ADHESION-LIKE MOLECULE SALM	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003854	Molecular Function	3-beta-hydroxy-delta5-steroid dehydrogenase (NAD+) activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006694	Biological Process	steroid biosynthetic process	Interproscan
GO:0016616	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf17_5.49 global RNA-seq network