Gene detail

Detailed information of CsqKR_Scaf17_3.24 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf17_3.24	SUA5	chr6	37211715	37216521	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf17_3.24

TTTTAAGAATGGGTTCTACAGCACCTCCGTTCAATACATATTTTAGAAAATGAACAGGAACGTTTTTGTAAAAGGCTCCGTTCATCTATCTGTCTATCATATGCATTACAGAATGTAGACGAAACACACACTAGCATGATGGCCTTTTTGGCTTCTTCTTTTTTTCCTTTCTCAGGAAACACAGCATTCGCTTTGCGTCAAGCCGCCATTGGTATATTGATCCTGCACACGATAGGACTTCTTCTAACTCCTCTCTTCACCAGAGTGTGGATCCCCTTCGCTCTGTTCATGGAGCTGTGCTGCATAGCACAAGTTACCCGCTGCTGGAACGTCCATCCTCCGTGGATGATTCTTATCACTGCCGTTCTCACCGTTGTCCCAGCTATTTATGGAGCCATTGCAGAAATGGTAAACGGAACTCTTCAAGAATATCTAATTCCTGTTGGAATGCCATTAGTTATGGAAAAAGACGTCGATCCGTTTGACGACCCGCCTTGTCCTCTCTATCCATCCAGACGATCGTCTGCCATGCGAAAGGTGGCCAAAGTTCTCAACAGTGGCGGGGTGATTGGAACTCCCACTGACACAGTGTACGCAATCGCAGCTTCGTGCAAGCATCCCGACTCGATACGACAAATATACGCAGTGAAGGATCGCCCTCAACAGAAGCCCATCTGTCTCTGCCTGGCCAATCTCGACCAGCTGAAAGATGCCAAACCAGACTTCAGTCCCCTTCTCTGGGCCTTCATGAGGCGGTGTTATCCCGGAGGAATCAGTTGCGTGGTGCCGAAAGGACAGTGGATGTACAATCTGGGTCTAGGTGATGCCTATGATATCGTTGGGAACAAGGACAGCATCTGTATACGGGTTCCAGACAGCACGGTTCTGGCTTATTTGGTTTCCTGGTCAGGTCCTATCGCCCTCACATCGGGCAACGTGAGCGGCGGACCTGATAGTACTCACCACAATATGCTGATAGAAGCACTTGGTAAGAAACTCGACGGCGTTATATGCGATGGTGAATCCAATGAAATCGTCGCTTCCACTGTTGTTGACTGTATGAATATTGACAAAGGTGAAATAAGCTACTTCAGAATCGGCTGCACACCCAAGGAAATTGTTGATCAACACTTTGAAGACGCAAAGAATGAACTTGGAGAAAAACAGTCCACAGTAGACATTGTAGATAATATTCCAAATGCTCTCAAAGTATAGCAATGATCACGTTACTGACTTTCACACTAAATAAAGAAGGAAAAGTGGACGACAATAAATTATTAAACGAACGCCGATGAGTACTTGACTGATCATCGACGTTTTGTAAAACCTTTCATACGTCACGGTGCATCCGCGAAAAGAGCAGCGTAACGTTGGTCGGAATTAGTCTTGAAATGTCTCCTTCAAAACTTCAATAAAATTATAATTTTGCAAGCCCATCAACGTATATCATGCACTATTTGAGAAGAATGATCCTGTTGAATAAAAGTTTATTATGATAATATACTTGATCAGCTGAAATGGAAATGCTACTAGAAATATTCATTTTTCAGCTTATATTTTTTGTTTTGTTTTTGTGACTTAGTTAAACGTTTGTAATATGTCTTTGATAAAAGTTTATCTATTGGTTAATGTCTGTGATTAATGTTGGTGGGCTTGCAGTAGTGAATAGAATGTGATAGCCGATGAAATCTAGTTCATTACAAAAAACTCAGTTCGTATAGCATATTAGCAGATCATAATATATTTTAAGAAGTTCGGTAACAGAAAATGTAACTGAATAATGAATGATCAGTAGGTTGTTTACCGTTAAAGTATAGGTGGAATGTGTGAAAACAAAACATTAACTATGTAAACCCTTAGTATTAGATTGTTATTTATATATGTTTCTATCAGATACCTAATAACAAAATTTGTTACTTTAAAGACTCCGTTTCAATATGGATGAATAGTCAAAAACATTCCTCACTAATACGAATTTTTGAGGTTATATTATTATTATCCGTTTAGGAAAAACCATAATAATTGATTGAGAAATGTATACTGTCGTCTTAAATATTTTATTACCTTTTAAAACAGGTAATAAAAAGGAAAGTTCATGATATATGCATTGCCCATGAAGTGTCTCAGACGGACCTAGGGTTGTTATGGAAGGGGTTGGCTTCTTAATAAGGGGTTTTATTAAGTTTTATATAAAATTAATAATACGTTTTTGAAAAAGGAATGTTATGAAATAGGGCCCTTTTCATTCACTTATAATCAGCGTATTTCATTTTAGTTAACTTGATTTATTTAGTTACTCATAATTATGGTTTCACATTAGTTTTCTAGATCGTTAAATTTTTTTTTTTTTTAACTTAAATAAAATATTTGTCCCGGCTTTAAAATTTTCCCCCGTTAAATGTTTATTTACTTAAATCAAAAAAAAAAAAAAAAAAAAAAAAAAATGTCCCGGTTTTAAAATTGTAACATAATGATTAGAAGT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01300	Sua5_yciO_yrdC	Telomere recombination	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006070	Domain	Threonylcarbamoyl-AMP synthase-like domain	Interproscan
IPR017945	Homologous_superfamily	DHBP synthase RibB-like alpha/beta domain superfamily	Interproscan
IPR050156	Family	Threonylcarbamoyl-AMP synthase, SUA5	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR17490	SUA5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000049	Molecular Function	tRNA binding	Interproscan
GO:0003725	Molecular Function	double-stranded RNA binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006450	Biological Process	regulation of translational fidelity	Interproscan
GO:0016779	Molecular Function	nucleotidyltransferase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf17_3.24 global RNA-seq network