Gene detail

Detailed information of CsqKR_Scaf175_7.28 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf175_7.28	METHYL-CPG-BINDING PROTEIN	chr7	29452545	29462143	+

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf175_7.28

ATGGACACAGTTGGGGTTGATGGAATGGCTGTTGTCAATCAGTATGTTGATACTTATGATGAAAATGATGTTGATTTGGGTCAGTACCAGCAAGATGATTACGATCAGCAACATGATGAATTTGATCAGCAGGAGAATAATTTTGATCTTCAGCCAGATTCTCATATAAGAAGTGACCATACATATAACACAAGTGCTCGATGTGAAGAAAAAGTACTACCCAATGGATGGATGAAACAGACTGTACAGCGACTGACAGGAAAATCTGCTGGCAGATCTGATGTGTATTTATTCAGTCCTGATGGTCAGCGATTTCGCACCAAACAGGAGATTGCCTCATACTTGGAACAAAACAACTTGATAATGGATGCAAAAGAATTTGATTTCAATAAATGGCCTAAATCTAAGAACAAGACCACAGCTGAAAAGAAGACAAAAACAAGAAGGAAGCAAATTATTGAGAAGAGGTCAGTTAGTCCAGAAACAAGTCCAAAGCCACTTAAATCTCCAAAAGTTAGAGAACACGAATCAACAGCAGTTCCATACCATTCTAGAGGTGATCATACCTATGATTCTGGCACAACATGTGAGGAGAAACTTCTGCCAAATGGATGGTCGAAAAAAGTAATTCAGAGACTGAGTGGGAAATCAGCAGGCAAATTTGACGTGTACATTTACAGCCCCGATGGTCATAAATTCCGTTCAAAAAATGATATTGCAACATACATCGCACAGCACAGTCTGGATCTGAATCTTGATGACTTTGATTTTGTGAAACTGAAAAATGAAGCAAAGTCTGCAGCTGGGATAATTCCAATACAATCAGCAAGGGCTCCAAGAAGTACAGTGAAAAAAGAAAAAGAACACAAAAAGCAAAGGAAAAAAAGCACTGAAAGTAAAAAGAAAGAAAAACCGTCTCCCAAAAAAGAACAACCTGTTATTAATCAGAAGCTGGTTGTCAAAATGAATTTTTCAACACCCACTAAACGACGTGAGATGCAAGCTAAAGAGACCAGAAAAAAGATTCGACGTGAAAGAATGAATAGCAAAAATAATTCAAAACGTGGTAGGCCTCGCAAAAATTCCTCGGATATAAACGGACCAAAGATAAAGTTTACGCGTCTGATGAACGGAGAAGATGGAGACAAGGAAATGAGTGAGATAGAGAAGAAGAGTAAATTGTTTTACGAGGCTGAGATTCTGAAGCAGCTCACGGCCAAGAAAGGACGTTTGTCGACAGATTCTGGAGGTGAAGATGCTGACGACGAGTCTGGTAACAACAACAGTGATGCTGATGTAGCAAACAAGGAGAACAAAATGTCTGAACAAATGTTGACTGCCGTGCAACGCTTGTCAGAATCAGAAGGTAAGAAAGATCCTGATGACGTGAGTGAAGATGATGAGGATGTTTTACAGAACCTGGTGACGGAGGAGAGTTTGTTGTATCCAGATTTTGATAAAAATGTTTCAGACAGTGATGAGACTGATTTGTCAGACATTGAGGACATCCAGGATGGACATGCAAATGAAGAAGACATGTCACTTTCCAATGATCTGAATGCAAATGGACAGAAAGTTGCAAACGACACTGACAGTTCAAAACTGAGTGATCAGGAACCAGTGTTAGAGAAACTGGCAAACGAATTTTCACATCCTAAAGGAAGTCGAGTGAAAGTTGAATACATCGCATCTTTTGATTACACTCCAGATATTTCCATAAACCATGGAATGGAAAGCAGTGATAGTAACAGTTTTGTGTTGTTTCAGCCTTTGACACAAGGGGACGGTGTTGAGGCAAATAATTCTGTAAATAAGAGAAATGGTGAATGTTCAGATTCTGATGTGTTAAACTGTAACAATGTTTCTGGTGACCAAGCTGATCTAGACCGAAAGACTAAAAAGGTGAAGAGAAAAAGTGTTGCCTCTAGTGAGGTAAAATCACCAGACAAATTAGCTGTGGTCAGACATAAAGAAAATGTTTCAAAAAGAAGAAAGCTGTCTGAAGGCAGCAGTAGTAATGTGAATAGCAGTGTTGATCATTCTGTAAACAGTGTATCTGAACATAAAGAACAGGTTTCAGAAAAGGACGAATTGTGTGTTCAGCCAGATGTGGAAAAGGATCTGTCTCATCTGAATGTGTCAGAAAAAAAATCACCCCAAAAACTGACAGTTTGTAAAACAACTGATTCAGAAACTGTTAGCAGTGATGAAAAAAAAGAACCTTGTAAAATAGCATTTAACAGCCTTCCAGAAAATGTAAATACTCCACAGAAATCTGACGTTAATTCAGTAGATGTTAAAAAATCTTTAGAGATGACTGAACTCATTGGGAACAAAGATGAAAATCAAAATGTCCAAGTGACGAACTGTGACGGTTCAGACAACAACTGTCTGAGTGACAGTTCTTTGGGTCAGACTTCGGTTGGTGTAGGTTTTGTCAAGTTGAGAAGACGATCATCTGACTGTGCTTTAAGACATTTGATTATGAAAAGTCGGAGAGTTAGCTGGGCAAGTTCTCAAGACAACAGTTCAGAGGAACAGAACTCTGCAGAATCTGTTGAGCAGAATCCATTTATATTACCAAAATCACTGTCTGGGAGTACAAATGTTTTACCAAAGCCACAGGTAAAAACAAGCAACTATTTCAAAACTGATGGCTCAGCACCCAAAATGCCACAGCCACATTTTCAGGAGAAAATGAAATGGACACCTCCAAAATCTCCTTTCAATCTTATACAGGAATGTCTTTTCCATGATCCTTGGAAACTGTTAGTTGCTACGATTTTCCTTAATAAGACCACAGGTAAAGCAGCCATCCCATTACTGTGGAAGTTCTTCAATCGCTGGAACAGTCCAGACGCTGCTAGGAAAGCCAACCCAGAAGCAATCGCCAGACTCATGCAGCCTCTCGGTTTACAGGAGAAAAGAGCAGAAACAATCATCAGATTTTCAGATGAGTATCTGACCAAAGACTGGAAATATCCAATAGAACTCCATGGCATTGGCAAATATGGCAATGATTCCTACAGAATATTTTGTGTTAATGAATGGAAACAGGTGAAACCTGATGATCACAAGTTAAATGATTATCACAACTGGTTATGGGAAACGCACAAAGCATTAGGCATTAGTTAA

Transcript

CsqKR_Scaf175_7.28

AGCGGTTGCAAGACAAGACGATCGTACCGAATTTGTTTTCTTCTTTATTTTTTGTTTTAAATGTTGTAAATAACTTCCACCATGGACACAGTTGGGGTTGATGGAATGGCTGTTGTCAATCAGTATGTTGATACTTATGATGAAAATGATGTTGATTTGGGTCAGTACCAGCAAGATGATTACGATCAGCAACATGATGAATTTGATCAGCAGGAGAATAATTTTGATCTTCAGCCAGATTCTCATATAAGAAGTGACCATACATATAACACAAGTGCTCGATGTGAAGAAAAAGTACTACCCAATGGATGGATGAAACAGACTGTACAGCGACTGACAGGAAAATCTGCTGGCAGATCTGATGTGTATTTATTCAGTCCTGATGGTCAGCGATTTCGCACCAAACAGGAGATTGCCTCATACTTGGAACAAAACAACTTGATAATGGATGCAAAAGAATTTGATTTCAATAAATGGCCTAAATCTAAGAACAAGACCACAGCTGAAAAGAAGACAAAAACAAGAAGGAAGCAAATTATTGAGAAGAGGTCAGTTAGTCCAGAAACAAGTCCAAAGCCACTTAAATCTCCAAAAGTTAGAGAACACGAATCAACAGCAGTTCCATACCATTCTAGAGGTGATCATACCTATGATTCTGGCACAACATGTGAGGAGAAACTTCTGCCAAATGGATGGTCGAAAAAAGTAATTCAGAGACTGAGTGGGAAATCAGCAGGCAAATTTGACGTGTACATTTACAGCCCCGATGGTCATAAATTCCGTTCAAAAAATGATATTGCAACATACATCGCACAGCACAGTCTGGATCTGAATCTTGATGACTTTGATTTTGTGAAACTGAAAAATGAAGCAAAGTCTGCAGCTGGGATAATTCCAATACAATCAGCAAGGGCTCCAAGAAGTACAGTGAAAAAAGAAAAAGAACACAAAAAGCAAAGGAAAAAAAGCACTGAAAGTAAAAAGAAAGAAAAACCGTCTCCCAAAAAAGAACAACCTGTTATTAATCAGAAGCTGGTTGTCAAAATGAATTTTTCAACACCCACTAAACGACGTGAGATGCAAGCTAAAGAGACCAGAAAAAAGATTCGACGTGAAAGAATGAATAGCAAAAATAATTCAAAACGTGGTAGGCCTCGCAAAAATTCCTCGGATATAAACGGACCAAAGATAAAGTTTACGCGTCTGATGAACGGAGAAGATGGAGACAAGGAAATGAGTGAGATAGAGAAGAAGAGTAAATTGTTTTACGAGGCTGAGATTCTGAAGCAGCTCACGGCCAAGAAAGGACGTTTGTCGACAGATTCTGGAGGTGAAGATGCTGACGACGAGTCTGGTAACAACAACAGTGATGCTGATGTAGCAAACAAGGAGAACAAAATGTCTGAACAAATGTTGACTGCCGTGCAACGCTTGTCAGAATCAGAAGGTAAGAAAGATCCTGATGACGTGAGTGAAGATGATGAGGATGTTTTACAGAACCTGGTGACGGAGGAGAGTTTGTTGTATCCAGATTTTGATAAAAATGTTTCAGACAGTGATGAGACTGATTTGTCAGACATTGAGGACATCCAGGATGGACATGCAAATGAAGAAGACATGTCACTTTCCAATGATCTGAATGCAAATGGACAGAAAGTTGCAAACGACACTGACAGTTCAAAACTGAGTGATCAGGAACCAGTGTTAGAGAAACTGGCAAACGAATTTTCACATCCTAAAGGAAGTCGAGTGAAAGTTGAATACATCGCATCTTTTGATTACACTCCAGATATTTCCATAAACCATGGAATGGAAAGCAGTGATAGTAACAGTTTTGTGTTGTTTCAGCCTTTGACACAAGGGGACGGTGTTGAGGCAAATAATTCTGTAAATAAGAGAAATGGTGAATGTTCAGATTCTGATGTGTTAAACTGTAACAATGTTTCTGGTGACCAAGCTGATCTAGACCGAAAGACTAAAAAGGTGAAGAGAAAAAGTGTTGCCTCTAGTGAGGTAAAATCACCAGACAAATTAGCTGTGGTCAGACATAAAGAAAATGTTTCAAAAAGAAGAAAGCTGTCTGAAGGCAGCAGTAGTAATGTGAATAGCAGTGTTGATCATTCTGTAAACAGTGTATCTGAACATAAAGAACAGGTTTCAGAAAAGGACGAATTGTGTGTTCAGCCAGATGTGGAAAAGGATCTGTCTCATCTGAATGTGTCAGAAAAAAAATCACCCCAAAAACTGACAGTTTGTAAAACAACTGATTCAGAAACTGTTAGCAGTGATGAAAAAAAAGAACCTTGTAAAATAGCATTTAACAGCCTTCCAGAAAATGTAAATACTCCACAGAAATCTGACGTTAATTCAGTAGATGTTAAAAAATCTTTAGAGATGACTGAACTCATTGGGAACAAAGATGAAAATCAAAATGTCCAAGTGACGAACTGTGACGGTTCAGACAACAACTGTCTGAGTGACAGTTCTTTGGGTCAGACTTCGGTTGGTGTAGGTTTTGTCAAGTTGAGAAGACGATCATCTGACTGTGCTTTAAGACATTTGATTATGAAAAGTCGGAGAGTTAGCTGGGCAAGTTCTCAAGACAACAGTTCAGAGGAACAGAACTCTGCAGAATCTGTTGAGCAGAATCCATTTATATTACCAAAATCACTGTCTGGGAGTACAAATGTTTTACCAAAGCCACAGGTAAAAACAAGCAACTATTTCAAAACTGATGGCTCAGCACCCAAAATGCCACAGCCACATTTTCAGGAGAAAATGAAATGGACACCTCCAAAATCTCCTTTCAATCTTATACAGGAATGTCTTTTCCATGATCCTTGGAAACTGTTAGTTGCTACGATTTTCCTTAATAAGACCACAGGTAAAGCAGCCATCCCATTACTGTGGAAGTTCTTCAATCGCTGGAACAGTCCAGACGCTGCTAGGAAAGCCAACCCAGAAGCAATCGCCAGACTCATGCAGCCTCTCGGTTTACAGGAGAAAAGAGCAGAAACAATCATCAGATTTTCAGATGAGTATCTGACCAAAGACTGGAAATATCCAATAGAACTCCATGGCATTGGCAAATATGGCAATGATTCCTACAGAATATTTTGTGTTAATGAATGGAAACAGGTGAAACCTGATGATCACAAGTTAAATGATTATCACAACTGGTTATGGGAAACGCACAAAGCATTAGGCATTAGTTAATATCTTGAGACAGAACTGTGAAATTAACTGCAAACAAAGTGAATGCAGCAGCTGAAGTTACTATAAATGTGGGACACAAGCATTAATTCTCATTCAGCATTGTCTTAGAGAGAAATTCAGAATTTGATTTGAATTTTTTTCACTTCTTACAGTCCGTTAGATTTTACACAGGTTTTTTCTGTGCAATTTCTTTGTGTGTTTGGCATCAACATTTGAAAATATGTGTTGATTCACATATCAGAATTTAAAAAAAGGAATATAATCTTTGACTCAGTGTCAAAAGAGTCATTACTGCATTTAATGTGTTTCTGTTCTTGTAAGTAAAGCATAGCTCCACTTTCAGACTTCAGTCGTAAGATGTATAAGAATCAAGAGCAAATTTCCCCATCGAATCAGTAGTATCAAGGATCATATGTTTGCTTATCCATACACTTGATTTCAAGATCTAGATATTTTTAATATTAAAGTGCCAATCCAACTAGAGGATTACAGCCAGTTTATCAAGAGTGAAGATTCACAGAACTGTTTTCCAATTCTAGATATTACTTCATAGTCTATATCCTGTCAATGCATTTTATCCAGTATTAAGAAAATCACATTAATGATCCATATTCCATTGCTTAACATTACTTTGAAGTTTTATTATTAAAAATATATTTCTATTAGAAACCAGAGTTTGACTTTTTTTTTTTTTTTTTTTTTTTTGTGAGGGCGACATTAATGAAAAAGTGATATCAAATTATAACATTATATTTTTAAAATGTAAGTTGAATTGGTTATTTAAAAGCAAACTGAATTACGCTTACAGTGAAATTTAAATTTAGAAAAAGATTGGTCATTTGAATTTATATGTAAACAAGTAGTTAGCCACACATCAGATTATACCGATATGAAACTAAGTTCATAATTGTTATTTATTGTCTAACAAATGGCTACAGAAACGTAACATACTGTACCAAAGCAAATAGAAATTTTTATATATTTTATTTATATTTTTTTATAAGTATGATATTTCACTTTCTTCTTAAACGTAATCAAGTTTGAATTTTATATATTTCTTACTGTCTTTAATAAAACATATATAATACTGATATTGTTTTTTTAAGGATTTTAAGCACTGGTCCATGACATTATTATAACGTTTTATGCCCCATTTTGACTACTTAATAAGAAAATTTTTATAATAAAAAAAATAATAATAATAATCGTCTGAGAAAATGTTAAAAGGGTT

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	MBD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01429	MBD	Methyl-CpG binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001739	Domain	Methyl-CpG DNA binding	Interproscan
IPR011257	Homologous_superfamily	DNA glycosylase	Interproscan
IPR016177	Homologous_superfamily	DNA-binding domain superfamily	Interproscan
IPR045138	Family	Methyl-CpG binding protein MeCP2/MBD4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15074	METHYL-CPG-BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf175_7.28 global RNA-seq network