Gene detail

Detailed information of CsqKR_Scaf175_1.1 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf175_1.1	SARM1	chr7	28822080	28828056	+

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf175_1.1

ATGGCTGAAGCTGTGCATGTACAACACTCCAAACCAGAGGCCTACGCCAGGCCTTCAAAAGAACTACCATCTGCCATGAGGAAAGTTCCATCAGAATCTACAATGCCTCAGGAGGCCAATGACCAGATCCCTACAAGTTCTTGTTCCAGAAATGACCCTTACAAGGCTCTGGAGCGTTCTCAGTCTGCTGCAGTTTTACATTCGCCTCAGGACTCCCCCAACCCAGATGTGAGCAATTTGGAAAGACTCCACGATGACTGCAGTGGAAATGTTTCAGAGTGCTCCAAGGTGTACATGGACTTGTCAAAGGCTGAAGCTTATGCCAAAGTGGAGCTGGAGTCTGGCAGTGGCAGCATGATGAGAATGTCATCCGGAAGATTCCTGGAAACCATAGTGCAAGATGAAGAACTCAGTACTGGTGATTTGTCTCATGTTTATGCCAGTCAGAGATCTCTCTCTGATGACAGCACGCCTAATCTGGGTGGCAGCAGTGAGGATCTTACTGGGAATGAATATTCATCCGAGTCCTCAACCTCTGTGGTCTTTGTGGACAGTTCGGTGGCTCAGCTTCAAAAGAAGAAGGACAAAACTAACCTGAAGTCTTCATTTCAGATCTATTCCCATTCTCTGAAGCAGAAGATCAAACAGCTGCAGATAGGATCAGTTCCTGAGCAAGTGGTTGCTCTGCAGGAGTTGAATGTGCTGCTGGAACAAGCCTGGTCACTGCCTGTTTATGGCCGCGACCTGGCATACAGCTTGTGTGACATAATAAGAAATGAAAAAGCATTTGACATAATCATAAATAACTGTGCCTCTTCTAACAGGGACTTGCTCAAGGTTTCTGCCAATCTCCTCGAACAGACCTTAACCACTGAGAATCGCAAACAGCTAGCTAACAATGGACTTGAAATTGTTGTCAGGATGATATGTGAGGCAAAGGGTAACTGTGAACTGGCTCGCCCAACAACTGGAATCCTGGTTAGTCTCTTTAAGATCTCAGAGGAAACGTGCACAAAAGTTATTCACCTTGGTGGTTTGGATGTTGTCATCTACTGGTGCCGGTGCAATGACCGCTTGACTCTAAGACACTGTGCCATGGCTCTGGCAAACCTTGCTTTATATGGAGGCCCAGAAAACCAACATGCCATGGCCAAAAGCAAAGTCCCCGAATGGCTGTTTCCACTGGCTTTCATAGATGATGACAGCGTGAGATACTATGCCTGTCTTGCCATTGCTGTGCTTGTTGCTAACAAAGAGATAGAGACTGCAGTGGAAAGCTCTGGAACACTTGATCTTGTTATGCCCTTTCTTATTAATCACAACCCGGCTGATTTCGCAAAGATGGATCAGTCACATCAGCATGGACGGTCAGCTGGATGGCTGAAGAGGCTGGTTCCTGTGCTGTCCAGCAAGCGCGAGGCTGCCCAAGCTTTAGCTGCCTTCCACTTTGTCATGGAGGCTGGCATCAAATCCGAACAAAACAGAAAAGAGGAGCTGTATAAAATTGGGTGCGTTGAGCCATTAAAAAGACTCGCTGGGGCACCTAACACTGTCGCATCCAAGCTGGCTGGAGAAGCCCTTCACATCATTGGTGAAGAAATCCCTCACAGACTGAGCACACAGGTGCCTCTCTGGACCATAGAGGATGTGACATACTGGGTTTCACAGATGACTGCAAAATTTCTCAGGGAACTTAAAGACCTGAAGGTCACAGCCAACTATACATCATGTGATCCAAGCAAGCTTTCTGATTGGCTGCTGGAGCTTGGACCAGATTTCCCCCAGTATACTTACCAGCTGATAATGAATGGAGTAGATAAAGCAGTTATGTCTTCAATGACAGATGAACTGCTCAGAGAATGTGGAATATTAAGTGGTGTCAGACAATCAGATGGACAGATTTCCTTGCCGCTAGACAGTCCTGATGTTGCTACTCAGAATAAAACTATTGATGCTTTCATCAGCTACAGAAGATCAAACGGTTCTCAGCTGGCAAGGTGA

Transcript

CsqKR_Scaf175_1.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07647	SAM_2	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001660	Domain	Sterile alpha motif domain	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR013761	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR039184	Family	Sterile alpha and TIR motif-containing protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22998	SARM1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003953	Molecular Function	NAD+ nucleosidase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0030425	Cellular Component	dendrite	Interproscan
GO:0034128	Biological Process	negative regulation of MyD88-independent toll-like receptor signaling pathway	Interproscan
GO:0035591	Molecular Function	signaling adaptor activity	Interproscan
GO:0048678	Biological Process	response to axon injury	Interproscan
GO:1901214	Biological Process	obsolete regulation of neuron death	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf175_1.1 global RNA-seq network