Gene detail

Detailed information of CsqKR_Scaf173_23.13 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf173_23.13	TYROSINE PHOSPHATSE N18, PUTATIVE-RELATED	chr7	4200531	4213077	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf173_23.13

GAAAGTACTTCCTTGTTGGTGTGCATTTGACAAGGTGGAGACGGGCGCACATGTGAAAATGTTGTTGATTTTAGACGTTTAAATAAAACAATCATGGCAGAAACTTTTGAAGATTGTTTGAAACAATTTATTAAGCTTGTTGATGATCTAAATGCAGAAGATGATACTGGAGGAAATGGGTACTGGCGCGAGTTTATGAAATTAAGAGAACTTCAAAAAGCAAATAAAGAAGGAGGACATTTTCTAGCAGAAGCTGGCAAGAAAAGTGTAAACATCAAGAAAAACAGATTCAAAGATATAATTCCATTTGATGCAAGTCGGGTGATCCTGTCACCTATTGATGGTGTTGAAGATTCAGATTATATCAATGCAAGTTTTATCAAGGATATCCATGGAAAGAAAGGATATATTGCAGCTCAAGGACCTCTTCCGAACACTATCCATGATTTCTGGCGAATGTTGTTGCAGTACAACATAGAAATCGTCTTTATGGCATGCTTGGTCCAGGAAGATGGAAAGCGCAAATGTGAAAAGTACTGGCCAGATGTTGGTCAGACTCAAGAATATGGAAATATTACAGTTAAACTGGTGTCTGAAAATGAGATAGCTCGAGACTTCATAAAACGAGTATTAACAGCTGAGTGTGACGGGAAGGTTCATCACGTGACACAATTTCAGTATTTGGGCTGGGCTGACCATGGCATACCTCGAACACCATCAGAGATTCGAATGATCATCGGCAAAATGAGAGAAGCCAGATCATCTGACGATACACCTTTGGTTATTCATTGCAGTGCTGGATGTGGCAGGACTGGAACTATCTGTGCTGTAGATTATGTGTGGAATTTACTACTTTACAGGGAGGATATCTGATGGTTTCAATCTGTTTGATATTATCAAGGACATTAGGGAGCAGAGACAGTCTATGGTACAGACTCCTGACCAGTATGAGTTGGTACATCTGGTGGTTAAAGATTTGTGTGAAGAAATGCTTAAAGACAGTGAGGCAGAGTATGTCAACATCAACTACGAAGATCCTTATGTTAATACAGTTATTACAGGTAAACCAAACGCTGATGAGGATTTGTACACTGAAGTTGAAGTTACAAGGCCTGAGAGTTCAGAGATAAAAGCTGAAAAGGTTGTCGAGAAACCTTTCCTGAAACCAAAACCTAGTGCAGGTTCAGAACAGAAACCTACTGCACCAGAAGCAAAACCTAGAGTTCAGATTACCCTTCCTTCGGTTCAGAAGCCTGTGACTGCTGCCCCTAAAGATTCATATGTAAACGTTCTGGCCCAAAATACTGGACCCAAGTTCAAAACTGTAATCGCAGTAAACGTCAAAAAGGACGATGTTAAGCCAAAAATGTCACACCCAACCCAGCCTGTGAAAACATCGACTACGCAGGCAGTGAGTAAGAGCGGTCACCTTGTGAACACTGTTTCACCTGTTATTATTCAAGCTCAACCAGTGAAAGCCAGTCAACCATCGGCTTATGTTTCTGATAATGTCTACTCCAAGGTTGAGCATGGCAAGACAGTGCCAGCATCGACTGCGTCAGCATCGACTGCGTCAGCATCGTCACAGGAAAGTGCAAAACAAATGGACTACAGTGCTGTCGATTTCAAGAAAAAAGACCTTCCCATATTTGTTGCTGAACAAAATCGAAGTAATATCGCCACTGCATTGCGACCTGAATCATATGAAAACCTAGTTTTTCCAAATACCAGTTATGAAAACTTGGTCCTTCCTGCAGCTAATTTGAAGTCTGCTGCTCCAGTTTCAGCTACAAACCTAGAGGAAGGAGATGCCCCTGCTATACCAGACAGAAAATATAATCCACAAGAAATTTGTTCACCCCTCCCTACCAGTGGTGTTCAGGTAATGAACGTACAGGCTGCAAAATCAGCTGGTGTCAGAGGTCAGCCAACACAGGTCAAAAGTCAACCAGTACAGGTCAAAAGTCAACCAGTCCAGGTCAAAAGTCAACCAGTTCAGGTCATAAGTTCTAATGAATGTCAGACAAAAGGAACAGGAGGGGTGAAAATCCATAGCAATGGTGGATATCCAGGGGCTTCAGCACCAGGTAGTCATGGTGATAAGAAATCTGATGTACATATAGTCCATGCTGCTCCCTCCCATCGTCCTCTGTTTGATAAGATCAATCGTCTTTCTGGCAGTTTAAGACGAACATCACCAACAGAACGGAAATCTCAGTATGACAACGTCGCAATCCAGTCTGGTCCAAAAAAGGGTTTTGTCCAGACATTGTTGGTACGTATCTTTTACTTTTTATATCTCTTTTTTTAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00102	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000242	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR000387	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR047170	Family	Tyrosine-protein phosphatase non-receptor type 12/18/22	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45983	TYROSINE PHOSPHATSE N18, PUTATIVE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004725	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0004726	Molecular Function	non-membrane spanning protein tyrosine phosphatase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan
GO:0016311	Biological Process	dephosphorylation	Interproscan
GO:0035335	Biological Process	peptidyl-tyrosine dephosphorylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf173_23.13 global RNA-seq network