Gene detail

Detailed information of CsqKR_Scaf172_9.7 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf172_9.7	LAMGL DOMAIN-CONTAINING PROTEIN	chr8	21683125	21704392	+

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf172_9.7

ATGCGGTCACCTTTACACAAAGTGAATTTTGCTATCGCGGTTATCATAACTGTCGCAGTCGTCGTACTGACAATTAACATTGTATCAACAACACACGTCATTGTTGACAGGCACGTTATCAAAATGCAAAGAGAAAGTAAACCACCGGCGGCAAGAGACAACAACAACAACAACAACAACAACAACAACAACAAGTTAACTCAAGAGCAGCATTTCTGCACAAATATCAAACGAGAAGTGAAACCGTACCGTCTATCGCGCCACCCCAGGGACACCGCGGCGCTACCAGGGATCTTCATTCACGACAACGCCAGTGAGACGTCAGTGTTTGGGAAAGCGATGTATTTGTCGGGGCATGAACTTATTAAGCTGAATAGAAAACACGCCGCGTTTCTCCTTCCTAATCTGACGTTCACTGTTTCATTTTGGTTAAAACCCGAGGGAGGCCAGAACGACCCTCAGACTATTATAGGTATAAAAACTGTTAAGAAATATGGAAAAGAAAACGCCAAGTTATTCTTTTCACTTCAAGCCGCTCGATCTCACAAATCTACAGTTATTTTTGCACATTCCATGTTTGTACCTAACCGCTGGACACACGTAGCTGTTAGTTACAACGGTTCTTCCATGAATCTGTTTGTGAACGGGGCACTGGTTGCCGTGGGTCGCGAACAAAAGGGAAACATCTTCACCGATGCTGTTGCTTCTTGCATGGACATTCGCATCGGAGGAACCTCTGGTTCTGATCATTTGTATCGGGGCCACTTTGATGAACTAAAACTGTGGAACTTATGCTTAAACCACGCTGATATAAAGTTACACATGCATAGGTCGAAACTTGTAGCGTCCTCCACAACGCATTTAGTTTTATACGAAAATTTTGACGACTTTGGTAGATGGCTTCCTGTTGAAAGCTTATATCCAAGAACTGTCGTTTCTGATATCCCAGTCTGCTGGCACGACATCACCGTAACACCGCCACCTTGCGGCCAAACCGTATGCGACAATCCGAACATTGTGCTGAGCTATGCGAAAGAGCAGCGGCTTCGATCGGAGAAAACAATAAGATACAGAATAATAAACTTAATGGACGACGACGGTGCCAATCCGACCGTGACCAACACGCAGATCTTCAACCAGAACCAGGCTCTGATATCCGCTTTCGCCCCGTACAACATCAGCTTCGAACTGCACGTCAAGAATATCAAAAGCACCGTGTTGAGGAGAAAGCTGATAATGTTCGGCTGCGACCCCGTGGATGTCGGGGACAGGATATGTCACCCGCAGTGTCAGCACACTCGCACCGGGAACGACGGAGGCGACTGCGACGCGGTGGATATTTTCTGTGATTCTCGGAGTATTGGCGACGGCCACTGCGATTTCGAATGCAACCGAGAATATCACCAGTGGGATGGCGGAGACTGCTGTCAGCCCGGACCCGACACGCATTACACGTGCTACGACCCATCGTCACCACACAGAGGTTATCTAAGCATAGCCGAGTACAAGACGATTCTCAATATCAGCAGCGACGCTCATTTGAATATCTTCTTCGCCTCGCCGACAACAGATCTACTAATTGGTCTGTCAACGTTTCCGTGGGAGAAAAACGTGTACTCGCTACAAGGTGGAACAGTTGTCCAGCCGGAAACTTTTGGCCTACCTGGACACACGGACGGTCTGGTGCATGAAATAGGACACAATCTGGGTCTATGGCACGTGCATCACGGCATCGGAGAACTGGACTGCTCGGATCCATGCGCAGAAACCCACGCATCCATGGAACTGGGAGATATGTGTGCCGACACGAAACCGACCCCTGCTAATTTGTTTTGTCGGGATCCCGATAGTTCCGCTGACAAATGTGGACTGTTGTCTTCCTATAAAAACACGCCATTCAGTAACTATATGAGCTATTCGGATGATGAATGTACAGACCACTTTACAGGTCACCAGGTGGCGCGAATGCATTGTTACCTTGACCTTGTATACCAGCCGTGGCGGACAGAACTGTTTCAGTCACCAGTTCCTCTTGCACCCAGGATCGCGTCAGCAGAAGAAACATCTCTGACTCTATCCTGGCTTCCACCACTTGGCCACAGAGACAAAGCGAATGAAATCTGCGCGCACTGTGATACACGCGGCTCCATTGTCCAATTTGCTGATACTGCCACCTCTCCAATACCTTTCACAATGGGCAGTCGCTGGACTCCACTTCAGGCAACAGTCCTCACCAAAATTACATCCTACTGCGACATGCCGTTCACGACAACGTTGTTTGAACACAAAACTTTAACAAAAATGAAAATTTATACCGCCTCTCCTGGTACAGCGATTGATGCTGTGGAAGTGACGTCATCGTCCAATGACAAACGATGTCGGTCCTGTCAGCCAATCAAATACCGTGTTTTTCGTGAAAAGTACAAGTATTGGATTGTAGCTGTTTCTGGGAGTTTAAACAGCGAAATGTCACCAAAACTGGAATATACACATGGACAGACGTTTTGTGGAGACGGACATGTAAACAGTAAATCTGCTGAACAGTGTGATGATGGTAACCTGGTTAACGGCGATGGGTGTGACATGGAATGTCGTATAGAAGAATTCTTCCACTGCAAAGGAAGTCCGAGTCTATGTTACAAGCATGAAGGAGACGGACAGTGTGAAGAATTCGAGAGACATTCCAGTGTTGTCGACTGTGGCTTTTTCACACCAGAAGGTTACAGAGATCAGTGGGCGTACAAAGCCATTGCAAACCCGTTGTATCAAAAACCGTCGTGTCCTGAATGGGTTTTAACAGGTCCACCAGATTTATCTCAGGCTTGTCAACCAGTAATAGATGAACATAAAGTTTGGTCCCCGTGCGAAAAGGCAGAAATAGGAAATTTCTGGATTGAGGTGTTTTTCCCTATTCCTGCTATCGCCACAGAAATAATTGTATACATATCATCAGACGGTCGTAGCGAACTAGATATGACCGAGAAGAATATTACTGTTGATTTAATCAAAACCACAAATCACATAGTTCCACTTGTTCCAAGGGAAACAACTTTAGACTGCTCAAAAAGTGTGGTTCACATTCCAATAAAACATGATCTCTCTCAACCATTTTTCCAAACAAAAGGTGCTAAGATTTCCTTTAGATCGTCCAACATTAGTCTTGCGGCAGTTCAGCTCAGATCGAGGCGCTATCTTGATCCTCTCACAATCTCTGCGTGCGACGCTGGCCAGCTCTACAATCCGCGGTCAGGTCAGTGCGTACCACAGAACTGTACAGGGTTCGTGTGCGAGAGGTACGTCATCAAACACGCCACAATTAACTGCTCTGGATGGGGTGAAGGTGACATCTGCACGGTTGTCTGCAGTGTTGGATATCATCTGTCAAACCCAGGAGTCAGTGGAGTTATTTGCTCACAGGGCCAGTGGCAAAGTCCAGACTTAGTCCTGTGTAAACCAGTGGAATGTCCACCACCACGCATACCTCACGCCACGGTTTCGTGTCCAGACGGGAAAGTGTTCAACAGAAGTTGTACGTTTAAGTGCAACTCCCCAGCAGTGAAGTGGGGCTCAGATAATACGATCGTATGTGAGGAAGATGGCGTTTGGTCTGCTCCGCAGTCCTCATGTCACATGACCTGCAGTCCTGTACGACGTATGTTTCATGCCAGATTGAGGGCTTTTGAATTGAAATGCAAAGAAAATGGACAGTGGACAACGGAAGAGTGCGTGCGAATCCAGTGTCCGCCTATTGACGCCATGTTTAGTGGTCTGTACATCTGCACAGACAAAAATTATGTTGGATCTAGATGCTCCGTGCACTGCAAGATGCCTGGCTACGAACCAGTGTTTTGGGGAGCACGTTCCAGAGTAAACAAAGAGGCCCAATTACCCGTTGTTGGCGACGTCGTGGCTACAGTAACGTGCTCGGGGTCGTCGTACTGGTTTCCAGATCCGCGCTCACTAAAATGCGAAAGGAAATGTAGCAAGGCGTCAATGGGAGACGGCTGGTGTGACGCGGTTAACAACAGAGAAAACTGCGGCTGGGACGGGGGCGACTGCTGCTCGTCAACGTTAGGCACCCGTGTCAGACCCTTTCCTGACACGTGTACGGCAAAATGTACTTGCAGGGATCCCAAAGCCAAAGAAAACATTTCAAAGAAGAAGAAAAAGCAAAAGAGAAAAAGAATTCGAAGCTTTCATTAA

Transcript

CsqKR_Scaf172_9.7

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00084	Sushi	Sushi repeat (SCR repeat)	Domain	Interproscan
PF05572	Peptidase_M43	Pregnancy-associated plasma protein-A	Family	Interproscan
PF13385	Laminin_G_3	Concanavalin A-like lectin/glucanases superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000436	Domain	Sushi/SCR/CCP domain	Interproscan
IPR000800	Domain	Notch domain	Interproscan
IPR006558	Domain	LamG-like jellyroll fold	Interproscan
IPR008754	Domain	Peptidase M43, pregnancy-associated plasma-A	Interproscan
IPR011936	Repeat	Myxococcus cysteine-rich repeat	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR024079	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR035976	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR043543	Family	Pappalysin-1/2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46130	LAMGL DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004222	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0007166	Biological Process	cell surface receptor signaling pathway	Interproscan
GO:0008237	Molecular Function	metallopeptidase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf172_9.7 global RNA-seq network