Gene detail

Detailed information of CsqKR_Scaf172_9.28 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf172_9.28	UNCHARACTERIZED	chr8	21740213	21745959	+

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf172_9.28

ATGGCTGCAGATATGTTCCAGATTCAGAATATGTGGAATATGTTAACAGAAAACAGCGATGAACAGAAAGAAAACGAATCTCCTGTTCGTAAGAGTGGTAGAAAGTCTTGGTTTGACACACCAAGATCGACGAAATTGGAAATTGCTGTAGAAAAAAAGAAACGTCGGTCTCCAGGGTCTGGAAATTCTAAAAATAAAAGAAAGTCTGAGGAGATGGAAACGTTATTATTAACCCACTTCACCAATCCTCCACACATTGAGTTTGGAAAAGTTAGAGTAAAAAATTCGCGAACAAGACATTTAGTATTGAAAAACCCACACGACTATGAACAAGAAGTCGTCATTGAAAAATTTCCTTACAAAAAGAAATTTTTTGTCGATGAAACCAAACTATTGGTTGGACCAGATGATTCTGAAATTATTACTATCACCTGGAGTCCTGAGGAAAGTGGACGCTGTAGAGAAATGTTGCTTTTCAAAGTTGATGGTCTTTATCGATTGCAAGCTTTCCTGTTGGGTTCAGCAGAACCTGAAAAGCAAATTCGAAAAGGGCCTCAGAGAAAAGGAATTTTGGGAACTAAAGTGAAACGACCTTTCTCCATCCTGCACACACCTGGGTTAGCATGCATCCGGGATAACTACAGTCCACAGGATTCATCAGAAAAGCCTAGATGGAAACAAGAAAGAGAGCCTTTGTCCAAAAATCATGATCAGGCAAATAAATATCGCGAAAAAGATGCTGCTTTTTCACCCCCGACACTGGAATCCACTGTTATTTCAAAGCCAGTGGGGGCAGAAATGTGTCGATCAGTAAAAATGTCTGACCTAGGCTGTTCACCATCACTTCTGACCAGTGTCAGTCCAATAGCACATGCACCAGATGATAACTATATTTTTGATTCGTACTCTGCTGTTAGGCAGACATCTCCACAGACTGAGATTTGTATTAATGGTGAAGTCGGAAAACAGGGGAATAACTTTTCAGAACTCTGTGAATCTGGTCCAAAACTGTCATTTGACACTCCAATAAAAGATACAGCATCAGCTTGCAAAGTGGAAGAAAATGGAATAACAACACCTTATAATGATACTGAAAATCTGGACAATCAAAACAATTGGGATGTGAAGAAATACATTTCACCTGAAAGTTTTCTGAATGACTCCCTCTGTGTAAAATCCAATGCTGTTGGTAATGTTGAATCATCACAGCTGTATGTTCCACCTGAAGACAGGTTTGCGAAGGTCATCGTCAGCCCAAATTCTTTTCTGGAGGATCTGAATGCTAGCATTGCTTCAAAAGATGGGCGAGCAAGCAGGTATGGGTCTGAGATTCCCAGTCCGTCATCACTCCTGAATGACTCCATTCCTCATAATGTGATGTTGAAGCAGCTTTCCACTGTGCGTACAAGTTTGATAGGTCAGAACAATAAACGTGATGAACGAGTGATAAATTCCACAGAAGAAGTTATTAACATTTTCTGTCCATCTGAATGCACACTGAGATCCACCTTTTCTTTGTTTCAAGCTAAGGCTAAAACTGGAGGAAAACCAAAATCACTTTCTAGGAGTATTCTCAGAAAAGAACAACGATTTGCAAAAATTTCAGATGTCCAGAGTCCCAGACGAACAACATATCTTGTGAAAAATGTCAAAGGCAAAGAGCAGAAGCAAACAAAGAACAGAACACTGTCAAGAACTCAGAAATACACTAACATACATAAAGCAGGAGTTAAAGGTGTAAAGAAAGCACAGCAAGAAGGCAAAGACATCCTTCCAAATGAGTTAGATGCTGCTGATAGTCTTGCAACAACACCAAAGGCCAATAAGTCTGGTTCTGAAACAGTCAGTAAATTAAAACAAAAAGATATTCTAAATCTTTCTGGTTCAGATACTGTAATCAAAATGAAACACAAAGCTCCCTTGAATCTTTCAGGATCTGAAACAGTCACCAAAAAGAAACATAGTAATATTCAGAGTCCTGAAATGTCACCAAAAGAACATTATACCACAAATAATTGTATGGACACACCAGAATTGAAGGTAGCAGACAGTCCAGAAGTGACAAAAGCATTTTCTATTACAACAGCTGATGGCAAGGTTACTTCAGTGAAAAGACTGTTTGCTGATCAGCTTGATAATGTGGAAACAGGGAACAAGGAAAGTCCTGCAGTTCCAAAAGTACTTTCTGAAACTGTGACCATAATAAAGAATGTGATCTCTGGTGAATCTCCCAGCTGCTGTCCATTTGTTGACATAGGATCACCCCAGACTTTGCCAGACTCTCCTGTTACAACAGTGAATACACATACTATAACAAAACTGAGAACATCAGATGCCTTACTTCAGGCATACAACAGAACAATCCAGAAGGAATTATTTCAAAAGGCAGAACTGATGACGTCTGGAGAAGAACATCATTGTGTAAAATCTGTGGAAAAGACCAGCTCTGATCTTGAAGGAAAAACATACTGTCTCTCTGCCTCAGAAACTAAGAAGTTTGGACAGGTCATCAACGAGGTTACATGTACAAAAATGCTTGACAAAGAAGATATTTGCTATTCTGGCTCTAACAGAAGGGGTTCTACACAACATTCCAAACTGACTGATATTGTTTCACCAGTTTTTACCTCCTCATCTCAGACTCTACCCAGCAGTCCTGTTCTTGAACACAGCCGAAGATCCACTCATGTTATTAGTAAACCAAAGCTGCTGAATCCAAATGCTAGTGGGAGAAGACTTTTTCCAGCACTGTCTGACAGAGAAACCCATGATCAGCCATCGTTCACTGTTGGATTAGATGCAGAAATAAACAACACACCAATTCTCACCCCTTTGGAGGACTCTCAGTTGCCTAATAAGGAGGAGAATCAGGTTTTTGAGTCAACAAGAATTGATTCCAACCCTTGCATAATTGTGACACCTCCATGTGTTTCACTGATAACTGATCCTGCTATTAATTTTAATGAAAGCGGAACTGTCCAGAATACTGCTTCAGAATTTACTGAGTCACTGACATTAGTGAATTCTGAAAAGCAGACTTTAAGGTGTTTATCTAAAAGTCACAGCAACAATATCTCAAAACCAAGTCCCAACAGTGAGACGAAGAGAAGGAAAATGAAGGCTTCACGTAGGTCTTCTGAAATATCAGCAGATATGTCCAATAAAACTGCTTTTGTTTCCAGTTCACTTACATCAGAATGTGAAAGTAGAAATTTACTTAATACTACGAAAGGCAGCCGAAGTTTCATGAAGTCAGACACCTCAGACTTCAGGAAAAGGAAGAGTGATTTAAAACCAGCAGCACCTAAATCTGTACAGAAGAAAACTGTGAGAAATGAGGTGGTGGAAGGACAATCTTCCAAGCAGAATAAACTTGAGAAGTCTTCATCTGAGACTGGTAAAAAGAAAGGTCTTTTGTGGAAGCTTTCATCGGCAAAAAAGAAACGACAGTCATTAGCAGTTGCACAGCCAAAACTTATCCTCATAAAGAAGTCAAAGTCTGGCATGATGCCAAAACACCCAATGCCCTTTGCTGCCAAGAACATTTACTATGATGAGCGCTGGAAAGACAAACAGGACCGAGGTTTTGTCAAATGGCTCAACTTCATTCTGACACCAGCTGATGAATACAACTACAGTCTCAGCAAGACTAAAGTTGATGTTGGATCTATTGCTGTCAGTGGAAACAAAGATGGAAGCTGCAGGGCGCCAACAAAAGAGGTCCTGTCTTTTAGGGCCTATGCAGCTAGACGTAGGCTCAATCGGCTAAGACGAGCTGCATGTCGTTTATACCAGTCAGAAGAAATCGTTACTGTCATTCTCAAGATTGAGGTTGAGAAGTAG

Transcript

CsqKR_Scaf172_9.28

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15780	ASH	Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR031549	Domain	Abnormal spindle-like microcephaly-associated protein, ASH domain	Interproscan
IPR051185	Family	Abnormal Spindle-like Microcephaly-associated	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22706	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000278	Biological Process	mitotic cell cycle	Interproscan
GO:0000922	Cellular Component	spindle pole	Interproscan
GO:0005516	Molecular Function	calmodulin binding	Interproscan
GO:0007051	Biological Process	spindle organization	Interproscan
GO:0051295	Biological Process	establishment of meiotic spindle localization	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf172_9.28 global RNA-seq network