Gene detail

Detailed information of CsqKR_Scaf172_9.10 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf172_9.10	UNCHARACTERIZED	chr8	21746595	21771325	+

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf172_9.10

ATGCTGCTTTGCTACAATCCTCTATGGCTGAGAATTGGTTTGGAGACTGTGTTTGGGGAAGTGTTACCATTACAGTCAAATACAGATGTTGTTGGTATGTCCAGATTCATTCTGTACAGACTAGTTGACAGTCCAGACATAGCCAGGCAGTTTTCCCACCCTACAGTGCCTCATCTCTACAGAGATGGTTATGCTGAGGCAGTGGCTCAGCATACACTGAAGAAATTTTTGATGGTTGTGTTTTTCCTTGATCGTGCTAAAACTTCGAGACTTATTGATCATGATCCTTGCCTCTTCTGCAAAGATGCTGATATTAAGGCCAGTAAAGATTTGCTTGTGTGTTTTTCACGGGACTATCTAAGTGGTGAAGGGGACATTACAAGACATCTGTCATACCTCGGCTACACCGTCACCCACATCCAGACAGCCATGGACGAGTTTGATTATTCCGTAACAAATCTTGGCGTTGACCTCCGTGACGGATTTCGATTAATGCGAGTTTTAGAATTTCTGATTGGAGAATGGAATCTAATGAATCAGTTGCGTGGTCCAGCTATCAGCAGACTGCAGAAGCTGCACAACGTAAACATGGTGTTCAAAACACTGTCTGAGCGAGGACTCGACATGGCACAGGTCGAAGGAGGACAGGTAACTGCTCGTGACGTAGTTGACGGACATCGAGAAAAAACACTGAAGTTACTGTGGTATATCATCTTTCATTTCCAGGTGGACATTCTGATTAACAAAGAAGAGCTCATTGAAGAAATAAAATACCTGGAACGCAGCCTAAGAATTAAGATCAGCATGCAGAAACTGCTGCACATCAATCAAGAGAACATTGCAAGACGAGATTCAGGAGAAAAGAACATGTTTATGGAAAACGAAAGACTGGCCTTACTCCTTCAGTGGACCAGAACTGTCTGTCTTCATTATGGTGTTAAGGTGGAGAATTTCACTGTGTCATTTTCTGATGGGCGCGCTCTGTGCTGTCTGGTGCATCATTACCACCCCGGCCTGCTGCCCTTAGATTGTATTCACATGAATACAAGTCAGAGCTACCAGCAGAAACTGGAAGATGAGGAATCGAAGCAGGTGGACGCAAATCTGAGTCAGGGAGATGACCTCAGCTTCGTTGAATTAAAAGACGAGCCCCAGCTGTTTGACACGCTGGTTGACAACGAGAGAAAGAATTTCAAACTGCTCTACGAGAAGATGTCCGAACTTGGAGGTGTTCCCTTGATGCTGAAGTCGACGGACATGACCAATACTATCCCTGATGAAAAAGTGGTCATCACGTACATGACCTATCTGTGCAGCAGACTGCTGGACATTCGTCATGAGTCTCGGGCAGCGCGAGTTATCCAGGCAGCTTGGAGGAACTACATTCTGAGACGAATGCTCAAAGTTAGAGAGAAGGAAGAAAAAGCTGCTAAAACCATACAGTTGGCCGTACAGCTGTTTTTAAAACGCAAAAAAAATCAACAAGCTGAAAAAGCTGCCATATTAATTCAGTCGCTATGGAGACAGTATCGAGCCAGACTGATGGTGACATGCCTCAAAACAGAAAAAGAAAATGAAATGGTCACCAAAGCAACAGAAAGAATACAGGCTGCAGTGAAAGCCTATCTTGCTAGAAAACATTACCAGAAGAAATGCAAAGCTATAGTTACTCTACAAGCTGGATGTAGAGCTTTTCTTTGTTATCGCATGAAGGAAAGAAGACAGAATTTCTTGAAGCTGAAGAAATCCACTTTGACAATTCAGCAGAGATATAGAGCTAAATTAACAGGAGCTGCAGCAAGAAGTGAATACATCTTGATTCACTCCAGAGTTTGTAAACTCCAAGCTCACATCAGAGGCTTCATTGAAAGAAAACGATACAAGGCAGTCCGACAAGCTGCTGTTTTTGTCCAGAAAAACTTTAGACGGTACAAAAGTCGCATCAGGTACCAAGCCACAAAACTTGCAGCAGTTATCATTCAGAGAGCTTACAGAACCTACAGGCTGAAGTGTCTTGGTATACAGAAAGAAAAGGAATACACTGCTGCAAGTATTTGCATCCAGCGCTGGCATCGTGGCGAGGCTATCAGGGAAAGGAAGAATTTCAGAATTTCTCGACAAGCTACAATTGTCGTTCAGTCTTGGGTACGAGGCTTCATTGCAAGGCGACGTTTTGTAAGAACTGTTTCAGCAGTAATTGTCCTGCAGCATCATGTCAGAAATTACTTGATGTACAAACACTCACAAGCTGAGCTCTTAAGACAAATATCTGCAGCCGTTCTGATTCAGAAGACTTGGAGAATGAGACATGCAAGAATGAAATTCAAAAGAGAACACAACGCCGTATTGGTTTTGCAGAAAAACTTTGCCATGCTGGTGGCCAGAAAACATTTTCAAGAGAAGAGAAAAGCAGCTCTCATTCTGCAAAAACACTTCAGAAAATTATTGGTAGTTAAAGCTACAAAGAAACAAGAAGACAGAAAACAATCTGCTGCTATTGCTGTTCAAAGCTGGTGGCGAGGAATTCAAGATTACAAAAGGTTTTCCAGAAACAAGCATTCAGCACTTGTTATCCAAAGATGGTACAGGCAACTTTTGGCACAAAAAAGACATGAAACTGAAATCAGAGCTGCAGTTATCATTCAACAAAGATATAGAGCTCTTCAATCTGGGCGTCGGGTAAGAAGGAATCTGTCCCACATGAACCAGGCAGCCACGGTTATTCAACGCAGATGGAGGGGTATTGCAGCTAAAAGTCATTATTGCAGAGTAAAGAAAAGTGTTATTATTCTTCAAACTTATGTCAGAATGTGGCTTGCTAGAAAACAGTTTAAAAGATTGAAGGAATCTGTAAGCTTTCTGCAGCAGAAACTCCGAGCTTATCTGGAAGTCAAAAGGACCAGGGAGAATTACCTGTCAACCAGAAATAAAGTCATCAAACTTCAAGCTGCAGTTAGAAGCTGGAAATGTAGGAGAATATTCACAGCAAAAAGGAGAGCTGCCATTGTCATTCAGTCTTATGTTAGAATGTACCTGCACAGACAAAAATATGAAAGAATTCTTGCAGCGGTTATAATCATCCAGCTGCGATTTAGATGTCATCAATCTGCTAAAGGTACCAGAAAAGATTTTCTGGCAGCAAGAAAAGGAATTATCTGTCTGCAGTCACACATTAGGAGACGAATACAGACAAATTACTATCAAAAAAAGAGAAACGCCATTGTAAAGCTGCAATCTTATTTCAGAATGGTTCAAAAGAGACAAATGTTTAATGATATGAAAATGGCAGCCATTTGTATACAAAGTCATTACAGAAGTCAGTGTCTGGTCAAACAAGAAAGAAATGCTTTTCTCCAAAAACGTAATGCTTGTTTGATAATACAACATGCCTTTAGAGGTTATGTAATCAGAAAAAAATTTCTGAAGTTCAAACGTTCAGCAATAATTCTACAGTCATACATACGTATGCGTCATGCACAAAAATGTTACACACTGAAAAGAAATGCTGTGATAACTATTCAGCAAAAGTACAGGCTGTTCTATCAGGTACAGAAAGCAAGGCAGGAGTTTCTGCATATTAAAAGATCTGTTCTAACCATTCAGGCAGCATTCCGAAGGTATTTAGTACGATGCAGAATTGAAAAAATGCATAGAGCTGCTTTAACAATCCAGTCACACTACAGGATGTATGCGGCAAGAAAAGAATACCACAGTCTGAGGAACTCAACACTGACTATTCAGAAATTTTACAGGCAGTACAGAGAGGCCAGATGGCAGCGTGTAGAATTTCTAAAACAGAAACATGCTGCCCTGGTTATTCAATGTCACCTCCGAGGACTGACAGCGAGAAGGGAGATGAAGAAAATGCATGCAGCTGCTGTAAAAATACAGTCATCTTTCAGATCTCATCAGCAGAGATGTCACTTCTTGGCGCTGAAGAGAGCAGCACTAGTCTGTCAGAGGTTTTACAGAGCTCGACAGTTGTCTCAACATCAGAGACGTTTCTTTCTCATTCAGGTTGGGGCTGCGGTTACCATTCAGGCTTCTTATAGAGCCTACATTATCCGGAAACAGTACCTTGATAAGTACAGAAAAATTCAACTCCTTCAAGCTTCAGCAAGAACATTCATACAGCAAAAGAAGTATCGGCGAGTCCTCGATGCAGTGAGAACAATTCAGAAATGCTACAGAGCACACCAGACTGCTGTGAAAGCTAGAAAAAGATACTTGGAAATGAGAGCCGCTGCTGTGGTTCTGCAAAGAGCATTCAGATCAGTGATGAGCATCAGAAAAGAGAGAAGAGAACGGGCTGCCATTTGCATTCAGTCATGCATCCGAATGGTGAAAGAGAGGAGCAGGTTTCGGAGAGTCCAGAAAGCCACTGTCTGCATTCAGTCATTAGCGAGGGGTTTCCTGGCACGACGTTTGTACCAGAAGAAACAAGAAGCTATCAGACTCATCCAGAGAAACATCCGGGTGTACATCTTAATAAACAGTTTCCAACGAGAAATATCAAAAAGGAAAACAGCTGCCTGTGTTATACAGAGGGCTTACAGACAGTACAGAGTACATAAGGAGGTCAAGAGAAATACTGCTGCTCTTTGTATCCAGGCGTATGTCCGAATGTATTTGTCAAGGAAGAAGTTTTTGAAAATTCGTCATTTGATCATCTCACTGCAAAGTGTGGCTCGTGGTAGCCTTGTAAGGAGAATGGTCAAGAAAAAGAAACTTGAGCAAAGAGCTGCCATTACCTTACAAAGAGAATTCAGAAGACACATGGAAGCTAAAAGATTAAAAATGGCCATCAGAATCAATACTATTTGTGGCAGTTCAGACAAACTGACAAAGTCATACAAAAGTGAAAACTTGATAGAATTCAAACTATCGTGTGTTGTGCTTAACTTGTTCTCATTTGTTTTCTGGTTTGCAAAGTGTTTGCTTTGTTTGTCATTCTTGCTGAGTGCCCCAGTGGAGATAACATTCACTTGCCACGTGGTGGTGAAGGAAAAGCGACAGGCCTACATTCAGCATTTTGTTAGAGTGACATCGCTGCATCTCGCAGCTGTCACAATACAGAGATGTTATCGCAAGCACTGCATCATCATGAAAGCAAAACAAAAACTGCACAATGTGATAGTTATTCAGAGGTTTATCAGAGCTTCGTGTGCCAGACTGAAGTTTGTCAGACTACGTAAGAGTGTGGTGGTCATTCAGAGAAAGGTCCGAGAGTGGATGCAACGACGAGACTGTGCAGCCAGGGTCATACAGAGAAACGTCCTTCACTGGCTGAGTGTCACCAGACAGAAACACCTTCATGAGAGAGCAACAGCAATACAGGCTGTATGGAAAGGTTACAGTTTGAGAAAGAGGATCAAATGCAAACAGTTACAGGCTGCAAGAAAACGCATCGAGGAGGCCAACAACTCAGCCACGGAAGAGAAAAAACTAGGCAACAGGACTACATCAGCTTTAGATTACCTTCTTAGATATCACCAGCTTTCCTACATCCTGGAGGCTCTTATACACCTAGGCAAGTTGTTGTATGATGTTGAAGACGCTGCAGTGGTGTTAGTGGATTTAATAGCCGTGTACCGCGACAAGGGAATCATTTTCAACAAAGCATGCACCCTGCTAGGAGTTCTGGCTTTAGATGAAAATAACAGACAGGATATAATCAGTCGGAGCAAAGTTGTTGAAAAGATTCAGACCATCCATTTCTTGACGATGAGAAAGCACAGCATAGAAGAGGCACAGAGAATTCGAAGGGCCAAACTGGCAGCTCAGAAAACATTCAACTCTACCCTTCCCCTGCCCACGCCCACAAAGCACAAACAGATCAGGCCTGCCTGGGTCCTCAGACGAAACAGTTTCGAGGGAATTCAAGATCCTCTGATGGCAATTAATTTTGTTATGGACAATTTACACCTCAAACCAAAAAGAGTCTAA

Transcript

CsqKR_Scaf172_9.10

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00307	CH	Calponin homology (CH) domain	Domain	Interproscan
PF00612	IQ	IQ calmodulin-binding motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000048	Binding_site	IQ motif, EF-hand binding site	Interproscan
IPR001715	Domain	Calponin homology domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036872	Homologous_superfamily	CH domain superfamily	Interproscan
IPR051185	Family	Abnormal Spindle-like Microcephaly-associated	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22706	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000278	Biological Process	mitotic cell cycle	Interproscan
GO:0000922	Cellular Component	spindle pole	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005516	Molecular Function	calmodulin binding	Interproscan
GO:0007051	Biological Process	spindle organization	Interproscan
GO:0051295	Biological Process	establishment of meiotic spindle localization	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf172_9.10 global RNA-seq network