Gene detail

Detailed information of CsqKR_Scaf166_9.6 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf166_9.6	UBIQUITIN THIOESTERASE	chr8	15499533	15505336	+

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf166_9.6

ATGAGTGAAGCCAGGAAGTGGCCGTGTGAATACTGTACGTACGAAAATTTCCCAGTAGCCAAGCGATGTACACTGTGTCGTGCACCACGCCCCCTGCAGCTCATCACAAACACTGCCGACAATGAACAGGACATTTACAAAATGGCCCCCTTGGTCTCGCCTAGCAATGCTCCAGCTTGTGGCACAAGTAAGAGCAGTGCGGACAACAAGTGGGCCTGTCACCTCTGCACCTACCTGAACTGGCAACGGGCTACCAAATGTTCTCAGTGCTTGACAGCAAGGAAGAAACCTTCTCCAGGCAGCATACAGCAACAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAAGACAGCATGAGTCCATTAAGTGTTAATGTGAACATAGAGGAAACAAACCCAGGACGAATCACACCAAAACGAAACTCACCAAACTCTCCAGAGGCAGCAAAGGCAATAAACAATGACATTAATAAAACAGTGGCAGCATTGTCCAACAGAAACACTGTCAAGTGGGCCTGTTATGCATGCACCTATGAAAACTGGCCCAAGACGTCGCGCTGCGTCTTGTGTGGGATTCCCAAGGCTGACTCTAATCTGGCAGCTGGTGGAAATGTTGGTGTTTTAAAAGAGACTGATTTCAAGAAGAGGGGCAGGGCGTCGCCAACAGTATCGCACAGTCTGGACAGCATCGAATCGTATCAAGACGGGGCATCGGCAACTCCGACAACAAGTGACGACAGGAATCGGTCGGAGGAAAGAAAACTGAGGATGTTGAGAAAGAAGCTGCGAGACAAAGACTGGCTGTGGCTGAATGCTTGCATTGGCGTGGCTGATGGCGACTCTAACGCTGTGCAAGCCTTCATAGCAGCAGGTGGTGACCCAGCACGACAGCTGACACAGGACGAAGTCATCCTTCTCAACAGACCTAGTGCTTTTCAGGTGGGCTACACCATTGTCCACCTGGCCATCCGATTCAAGAGAGAAGACATGCTGGCAGTGTTGCTAACGGCGACTGATGTGGCAGCAAAGGCTGTGAAGCGTCTCCCCTCACACTCTAGTCCAGATCTGGCAACTGACATCCGACGTGAAATCCTCTCATCTCTCCGTCAGCGGAAAGGCGACTTCCCTTGTTTTTTCCTAGCAGACTGTGTCACGTTTGCACTTCCAACAGATATTGAAGATCTGCCCAGACATGTCCAAAGTCAGCTGTTTGATGAACTGTTAGACAGAGAAGTACAAAATGAGCTGGAAGTTGAAGAAAACATAGTTAACTGGAGTTTAGAAATCTGTGATCGACTTGGCAGTCGCCTGTACCCTCTGTGGAACAGGACAGCTGGCGACTGTCTGCTCGACTCAGTGCTGCAGGCAACGTGGGGCATATTCGACATGGACAACGGCTTGAGACGAGCAATGGCAGACAGCCTCAACGAGGGAGCATCATTAGAACAAACACATATCTTTGCTCTTTCACACATCCTTCGCCGTCCAATCATTGTGTATGGAGTCAAATACATCAAGAGTTTCCGAGGAGAAACAATAGGCTTTGCAAAATTTGAAGGTGTCTATCTGCCTTTACTGTGGGAGCAGAGTTTCTGCTGGAAAACACCCATAGCTCTTGGTTACACCCGAGGCCATTTTTCTGCCCTTGTTCCCATGGAAACAGACACTGATGATGCCATTGGGGCAGGTGCTGACATTGACACTAATGATGACAGCCAGACTGCTTATCTGCCCTTGGTAGATTATGAAGGCAAAAGATTGCCTGTTCATTTTCTAACAGGGTCTGAGATAGGTAGAGAAGACAGTATACTTAACATCACTATAAATGTAAATGTTGTTGATATTGCAGATAGACTGCTGCGTCACAAAGGAGGGATTCTGGTTGCCCTGCAGAAACTAGGCAAGCGCCCACTACTGGTCAAACAGATGGTAGACGAATGGCTGGATCATTATCGGCAGTTGAGTCACGTCATACCCCCTCCCCACCAGACTAGTCTGTCCTCTCAAAACTTCTCCAGTGACGGGGAGAGTGACCCAGAGTGA

Transcript

CsqKR_Scaf166_9.6

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|ZnF\|NZF
Ubiquitin Family	DUB\|OTU\|OTU

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00641	zf-RanBP	Zn-finger in Ran binding protein and others	Domain	Interproscan
PF02338	OTU	OTU-like cysteine protease	Family	Interproscan
PF18418	AnkUBD	Ankyrin ubiquitin-binding domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001876	Domain	Zinc finger, RanBP2-type	Interproscan
IPR003323	Domain	OTU domain	Interproscan
IPR036443	Homologous_superfamily	Zinc finger, RanBP2-type superfamily	Interproscan
IPR041294	Domain	Ankyrin ubiquitin-binding domain	Interproscan
IPR051346	Family	OTU Domain-Containing Deubiquitinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13367	UBIQUITIN THIOESTERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0070530	Molecular Function	K63-linked polyubiquitin modification-dependent protein binding	Interproscan
GO:0071947	Biological Process	protein deubiquitination involved in ubiquitin-dependent protein catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf166_9.6 global RNA-seq network