Gene detail

Detailed information of CsqKR_Scaf165_15.20 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf165_15.20	CYTIDINE DEAMINASE	chr10	1956724	1964500	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf165_15.20

GTCCAAAGGAAAATTAAGTTACACATAAATACTTCGACCACCCAAATCCCAGCTGTTTACATTTTATATAGAATTAGATTGACGGTTGATTCTGTGAGAAAAAGAAAAAAAAAAAAAAACAACGTGAAAATATCTAACACATAAACCCCATACTTATTTATTAATATTTACTACCAGTTCATGGTAGGCTCAGAAAATTAATTTTTGTTGAAGGTATTTTGACTTATGTAAGGGGAGTAACTCTGAAATGTTAAATGTCATTATGACAACAAGAGTTGTTATTCTCGCGTTTCAGCATAATTAAGTAAGATCTAGGTAGTAGTAGTAGTAGTAGTAGTAGTAGAAGCAGTGGCAGTGATACAAATAATATTACAAGCAGGAGCTGAATTAGTAGCCATATCAGTAGCAAAATAGTAGTTGCAGTAGTAAGAGTAGCAGCAGTATTGAAAACGACCACGTTGCAGGGAGGTCCCAGTCGAAGGTACGTGTAGAGGATTTCTAATTTTGAAGAATCAAGTTCTAATAAAATTCTACATCTGTTTAAAAAAACAAATCAAACCTTTCCCTTTTTTTTTTCGGATCGTGATTTTTCATGCTGTCTCTCACACAAAGGAGACGACGTTAACATAGTTACACAATCGGTGACGTACCGTACACAGTCACGTGACATAGAGGCACACGCATATTTCGTTCTTCCTTCCTTCCTTCCTAAGTAGTTTTACATCCCAGCGTCGAGAAGAAGCACGCTTTACTAACAGAATCATGTGACGTTACGATTTCCTAAGTACTCGCGCAACCGCGTAACCTTGACGACAGAACAAATTAATTACGGATGTAACATCTGGCGAACAAGGCGGCCAGAGAGAGAGAGACACGTAAAGGTCACGGAGGGAAATAGACCTCGGAATGTGTGTCAGTATTATTAACGTCTGCAGCGATTCAACATCGCTCGACACGCCCACGTCTCGTTACGGAATTTGCCGATAGGGAACAAAGTATTCGTATTGTTAAGAATGTTGCGCACAAAAGTAGTACAGGCTTGTTGCGGCGAACTGATTGTTGTCATATGAATGCAAAACGTGGCTCGTAATTCGTAGAAAACGTCCATTTACGGTTGGTCAGTTTACGGACTTTGCCGATGGAAGGCGAGAAAATGGAACAAAGCACGGTGGAGCAGCTGGTCAGCCTGAGTCACGAAATGAAAAGTAAGTCTTACTGTCCGTACAGCAAGTTTCCAGTGGGTGCAGCTCTTCTCACGAAGGAGGGGAAAATATTTACAGGCTGCAACGTGGAGAACGCGTCCTATGGTTTGACCATCTGCGCGGAGAGGACCGCCATTGTGAAAGCCGTTTCGGAGGGTTACCGCGAATTCACTGCAATTGCTATAGCTAGTGATCTAAAAACAACTTTCATTGTTCCTTGTGGACCGTGTCGGCAGTTTCTAGTAGAGTTTGGACTTGACTGGGATGTTTATATGACGAAACCCGACAAAACATACCGAGTGATGAAGGTCAAAGAGTTACTTCCCTTCAGTTTTACCCCGGCTGATCTCATAGGGAAAGTCAAAGACTGAGCCGAAGTATGGCCGATATAGTTTTGATTTGTTTCATTATTATTTTTTTATTTTTCTGGAAAACTCGGTTTGTATTAACGATTCTGTAGCTGTTTTGTTGTTTCCTTTAAAACTGATTTGGATGCAGATGAACTGATGCAATGAGATTAACTATGCATAGATAAGTAAATAAATAAGTACATAAATACATAAATAACAAATTGAATAAATAAATGAATAAATAAATAAATAAATAAATAAATAAATAAAATAATCAAGTTTTTTTTTCTTCCTGCCAACCCCAATACGTCCTGTCTGTCTGTACGTCTTTTTGTACGATTTTTTCTTTCTATCTTTTTTGTCTGTGAGTATGTTATACTGTCTGTCTATATTATCAGTTAATCCATTCATCAATTCATCTCCGCGGACTTTCAGTTCATCTGTACGTCTGTCAGTTTGTCTCCATTAGTTCATTCGTGTCCTGTAAACGTTATTTTGATTAATACGGTAATTCAGGTTTTTTGTCGTGGGTGTTCTTGGTCAGACAAACTGTGTTCGTTAACAAGCAAGACACAGCAGTCCAGTATACCACGGCTACAACGTCGGGGATGTCCTGTCAACTTTAGCTACTTTACAGTTCACGATGATGATGATGATGATGTCGTTGCTTTAACGTTTTATTTGTTTGTTTGTTTGTTTAATTTAATTTAGTTTTATTTAATAAATTTAATTAAATTTAATTTATTTAATTTATTTATTTATTTTTATTTATTTTTTTATTTTTATTAATTTTTTTTTTGTTTTTGTTTGTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00383	dCMP_cyt_deam_1	Cytidine and deoxycytidylate deaminase zinc-binding region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002125	Domain	Cytidine and deoxycytidylate deaminase domain	Interproscan
IPR006262	Family	Cytidine deaminase, homotetrameric	Interproscan
IPR016192	Binding_site	APOBEC/CMP deaminase, zinc-binding	Interproscan
IPR016193	Homologous_superfamily	Cytidine deaminase-like	Interproscan
IPR050202	Family	Cytidine and Deoxycytidylate Deaminase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11644	CYTIDINE DEAMINASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004126	Molecular Function	cytidine deaminase activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0009972	Biological Process	cytidine deamination	Interproscan
GO:0016787	Molecular Function	hydrolase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf165_15.20 global RNA-seq network