Gene detail

Detailed information of CsqKR_Scaf162_10.38 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf162_10.38	RED PROTEIN IK FACTOR CYTOKINE IK	chr6	9516145	9527469	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf162_10.38

TACGTTTTGATGTTAGTGTAGTTTGTTTTGATGACCTGAAACAGACATGCCTGAAAAGGGAGAACCAGAGGTATTTTCTAACCCTCTTCCACCAAGTGATCATTTCAGGAAACCAGACGATGAAGACGATGAAAGCCATCCTCTTACCAATGAAGATTTTCGTCGGATGTTAATGACGCCAAAGGCATCATCAGCAGGAGGATATCAATCTACAATTCATGCAGCACTAAATGATCATTCCAAGGCAGATGAAGAGGATGATGATCCAGCAACAAGACGACAGAAAAGAAAAGCAGAGACAGAATGTTGGTGTGCTCTACTGTTGTGGGTAGTGAAAAAAAATGAATCTATTTTGAATTACTATGCTAAACTTAAGAGAATTGAAGAAGAGAGACAGAAAGAACTGCGAGACAAATACAGAGACAGAGCACAGGAGAGAAGAGAAGGTCACAACAAAGATTACGAGGAGACTGAAATTATTAGCACAACTGCAGATTACCGTGCAGTGGCTCCAGATGCAAAGGCGGGAGAGAACTATGCCGAACGTCGAAAACAAGTCATTCAAGAATCCAAATATCTTGGAGGTGATATGGAACATACTCATTTGGTGAAAGGTCTTGACTATGCCCTACTTGAAAAGGTGCGTGCAGAAATTGCTTCTAAAGAAATGGAGGATGAGGATGCTATGGAAAAAGCTGTTACTCAAAAAAAGGAAGAAGAAGAAAATCCAGAAGACAAAATACAGTTCAAGACAAAAATGGCTAAAAACATCTACCGGACTTTGTTCAAAGTGAAGCCTCTGGAGAGGAATGAACTCTTCCTGCCTAAAAGAATGGCCTATGTTGTTGACCTGGAAGACGACTTTGTTGAGTCAGATGTTCCCACTACTCTTATCAGAAGTAAAGCAGACTGTCCAAGTTTAGAGGCTACGACAACACTGACAACTAATGACATTGTCATTAACAAACTGACGCAGATTCTGTCATACCTGCGTCAAGGGAAAAGAGAAATCAAGAAAATGAAGAAAAAAGACAAAGTAAAGATCAAGGATGATGACAAAATGAAAGAAAAACTAGCTGGAGCTGATGATAACATTTATGGAGGCATTGGAGAGTACATTCCCTCTTTCTCAAAGCAGAAAGAAAAAAAGGAAAAGAAAGACAGAGATAAGGAACGAGATGGTTATCGAGATACACACAGAGATCGTGACAGGGAAAGAGATCGTGATTACCGAGATCGACACGACAGACATCGTGATGACCGTGACAAAGAGAGACAGAGGGACAGAGATCGTGGCAGATCTGACAGGGATAGAGAGAAGAGAAAATCCTACTTTGAAAAACCAGTGGAAGAGGATGAGATTTCAAAGCCTGCAAACTCTGCTAAAGATATTGTTAAGAACATCAATGACAGATTCAAAGACTTTGCAGAATTGGAAGAAGAAAAATTAAAAAAAGCAGCAAAGATGGAAGAAGACAGGATGAAGAAACTGAAGGCTAAGAGTGAGATAGACAGTTATGCTGAATGTTACCCCGGGATGATGGAATCCTTTGATGCATTTGGTGATTCTGATGATGAAGTTGATTACACAAAGATGGACCAGGGAAATAAAAAAGGACCCATTGGACGTTGGGATTTTGATACACAGGAAGAATACAGTGATTACATGTCTAATAAAGAAGCACTGCCGAAGGCTGCTTTCCAGTATGGTGTTAAAATGTCTGATGGCCGAAGAACCAGGCGTACTGGACCTAAAGATGAAAAGTCTAAACTAGATCGAGAATTGCAGCAGATAAACAACATTATTAAAAAGAGAAAAATCACAGGTTTTGAACATGGTGGAAAACAGCCTCGATACTAAAAATGGAACTATTTTAACACAAAAAATATGGCAAGAAAAGATTGTTAAATTCAAAATAAAATTTTCCTGAACAATTAATTTTCAGCAAGTTTATTATCTAAAATGCCAAAGCAAGATTTTATTTAGTAAAATTTTAAAAAAAAAAAGAAAGAAATGAAATATTACTTTTTGTCCAGTTGCTCAATATAAAATATAAAATTGTGAAAAAAAGGAACTTGTATAACAATTTCAAATAATTCACCTCCCAGAGACTGTTTTATAAGACTTTTTCTCCTACCAGTGAGAAGTGAAACTGAAACTGACACCAGTACCAGTTTATTTCATTTTTAAAGTGGTCATCACATTGTTTTAATATTAAGAATACATTAATTATCTTTTAGCATTAATTGTAATGATAGCATTTTCAGTTCCTTTATTAAATGGACTATTATCTAAAATTACAGCATCATCATTAGCATTATTTATACAGCAGTTCATGTTAAATTTAAAAAAAAAATTTCATTTGGCTGCAGAATAGTAAAAATGTCTAAGTTATTAATTGTATGTTTAAATATTCCATAGAAATACAGTTATAACATTTTACAACATCCTTTGTATAGTTGCATTTGTATATGAAATAAAATGTTTGATGATAAAACAAAATGTTTAAAGTTGTCTAATTTGTTATCAGGTGGTATCTATAGTACTAAAAAAACACCTGATTTAAATAATTTGTTTAGCCACAACTGGGAAATACTGCATTCAGTTTCAACTGCAGTTCAGTTTTATT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07807	RED_C	RED-like protein C-terminal region	Family	Interproscan
PF07808	RED_N	RED-like protein N-terminal region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012492	Domain	Protein RED, C-terminal	Interproscan
IPR012916	Domain	RED-like, N-terminal	Interproscan
IPR039896	Family	Protein Red-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12765	RED PROTEIN IK FACTOR CYTOKINE IK	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf162_10.38 global RNA-seq network