Gene detail

Detailed information of CsqKR_Scaf159_1.27 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf159_1.27	AP-5 COMPLEX SUBUNIT ZETA-1	chr15	2655092	2665583	+

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf159_1.27

ATGGCTATGTCATCTGTTGCAAATTTGCAGCATCAAGCTTGCAATGCATCTCAAGAAGACATTGACAAATTGTGTAAGAACATCACTGACACATTCCACGTTTCAGAGAAGTCTTCAGAATGCATTGGATATCTGCAGTCTTTGTTTTTCATATTACAGGCTTCTAAAAAAGAACTATGTATCTCACAGGAACTCTTTGTTACCATGGTGACTGCAGTTGGATCGTCATGGAATCAGCAAAACATCAGACAGTGTATTTTATGTCAGCAAATAATTTCAGAATTGTTACCAAGCCAAGATTTTAATTTAGCCTCAGACACATCTGTCTGTGAAAATCATCTTCCATTTTATTTACTACAAGGTGAAAAGTCAGGATGTCTGGAAAGGTCATTTAATGCAGCAGTGAGGTGTCTGACAAGTCCTGAATTTGACTTTGAGAGACAGAAGAAAGCTTTTTCATTCCTTGTTGCTGTTGTCATGCTGCATAAAGATGTGGCTGCTGAAGACTGTATCAGAGACACAAACAACCAGATTTCAAAATGGCTGATGAATGCTAGTCTGCAGCAGGCTCCAAATCCATACACGATTAATCCATTTCGCAAAGACAAGAGTAACACGGTCACAGAGATTGACGGTACACCAAGCAGAAACTTCTTTACAGTACTTAACATCGGCCAGTACTACACTTCAGACCAGCTTTTGAATATCTACAGTTTTTCTCTGATGTACCAGTGGTTGTTCTACTCACAACAGACACTCTCTGAGCATATTGATGATTCTTCACAGGTTGCCAAGGTTACTCATGTGTTTGAAGCTCTGGTTACCAATTCCATAAACTACTGCTTTCGAGTCTTTGACCAATGTGAAAGAAAGCCCAAAACACCATCCGACAATGAACTTCAGACTGCATGTCTTTCAGAATCAGTGACAATTCTGGATCTAATCTGTAAAATAGATGAAGGTCAGATACCTCGTGTTTACCAGGAAGTCAAGCGACTTTACTCTCGAATATCCCAGAATGCATCATTGTTGGCAGTTAATATTCAGATTCTACAGTTTTTCCTTAATCATAGTGCTGCTGTAGTGCACGACCCTGGGGAGGCGTATGAAATGTTTTTTAACAAACTTCTGAGTCAGCACTTTCAAGATCCTGGTTTAGCTTTCGATGTTGTGAGGTTTACGCTCAACAATCTGGAAACCCTGTGTTACAAAACTAACATTCTGTCAAAGTATTTCCCAAACTTGTTCAAGTTGCTTGCATGGCATCCCAGAACTTTCCTTGCAGAATTTACAGAACTGTTGCCTGCCTTTATGTCTCAGACAACATCCATGGAGGTATTTCATGCTTTGTTAGACTTACCCTGTATGACAGCAGCTTTAGAAACCATAGAAAGGACACAGAAAATGGAACTGCAGATGTCCTCACTTTTGGCTTCCATTGACATTGAACCTAGTGTGTCCTCAGAGGCTTATCAAAACCCTTTATATCATCCATTGTTCAACTTTGTTACTAGAGCTGAAGCAGGGTGTGGAGACACCATTAACAGACTGTCAGCACTTCACCATGTATTACAAGATCAAAAAACAAATCCAAGAGTCAAAGTATGTGGTCAGACTGTTTCTACTCTTCTGAGAGTTTGGTTTTCTGTTATATTAGAAGAAGTAGATGATGGGTTTGCTTCACAGTTGTTACCAGCTCTGTTGGAAAGATCAGGACTTCTGTATGATATACCTGAAATCAGTTACCAGCTTGATATTAAACAGTATGTCTGGGCTGTTGGTGAATTTTGTTCAGTGCAGTTTCATGTAAAATGTACGGCTGATTTGATTGGTCAGTATTACGGAACTCTGGAAACATTGATCTACGAGGTGTCAGGTAACCTGACATCTGCAGCACCTCAGGAAAGAAGCGGGCCAAAGATCATGTCTGTGTTAATGTCAGCCATTTCCAAGCTTGCAACCAGGTGTCAAGATTTAATTCCAAGAGCTATTCTTTGCCTTACCAAGGTTGCTAGGCAACACATGAAGAATTATTTTGATAAAGAAGGGTCTGCCACTCTCGTGAGTCGAGCACAAGAACTAATAAACATACTAAAGTTACCCAACTTTGCTGCTCAGATTTTGAATCCATCACCAGAGATTGAATCAGGAAGGCAAGTTTTAAATTATGTAACTGTCCTGAATATTTATACAAAGTGTCATACTATATGGCACAAAGACAACACATCTCTTCCAATTATTCTGCGTCAAACTCACAGGCTTCTCAGTGTAAAATAA

Transcript

CsqKR_Scaf159_1.27

AGAAATGTCCGGTTCCTCCTTCCGGTTGAATTAACTTCAAAGTTCATTAAATGGCTTGATCAAGTTAATATATAAATGAACTCAAAATAAGACTTAGCATGGCTATGTCATCTGTTGCAAATTTGCAGCATCAAGCTTGCAATGCATCTCAAGAAGACATTGACAAATTGTGTAAGAACATCACTGACACATTCCACGTTTCAGAGAAGTCTTCAGAATGCATTGGATATCTGCAGTCTTTGTTTTTCATATTACAGGCTTCTAAAAAAGAACTATGTATCTCACAGGAACTCTTTGTTACCATGGTGACTGCAGTTGGATCGTCATGGAATCAGCAAAACATCAGACAGTGTATTTTATGTCAGCAAATAATTTCAGAATTGTTACCAAGCCAAGATTTTAATTTAGCCTCAGACACATCTGTCTGTGAAAATCATCTTCCATTTTATTTACTACAAGGTGAAAAGTCAGGATGTCTGGAAAGGTCATTTAATGCAGCAGTGAGGTGTCTGACAAGTCCTGAATTTGACTTTGAGAGACAGAAGAAAGCTTTTTCATTCCTTGTTGCTGTTGTCATGCTGCATAAAGATGTGGCTGCTGAAGACTGTATCAGAGACACAAACAACCAGATTTCAAAATGGCTGATGAATGCTAGTCTGCAGCAGGCTCCAAATCCATACACGATTAATCCATTTCGCAAAGACAAGAGTAACACGGTCACAGAGATTGACGGTACACCAAGCAGAAACTTCTTTACAGTACTTAACATCGGCCAGTACTACACTTCAGACCAGCTTTTGAATATCTACAGTTTTTCTCTGATGTACCAGTGGTTGTTCTACTCACAACAGACACTCTCTGAGCATATTGATGATTCTTCACAGGTTGCCAAGGTTACTCATGTGTTTGAAGCTCTGGTTACCAATTCCATAAACTACTGCTTTCGAGTCTTTGACCAATGTGAAAGAAAGCCCAAAACACCATCCGACAATGAACTTCAGACTGCATGTCTTTCAGAATCAGTGACAATTCTGGATCTAATCTGTAAAATAGATGAAGGTCAGATACCTCGTGTTTACCAGGAAGTCAAGCGACTTTACTCTCGAATATCCCAGAATGCATCATTGTTGGCAGTTAATATTCAGATTCTACAGTTTTTCCTTAATCATAGTGCTGCTGTAGTGCACGACCCTGGGGAGGCGTATGAAATGTTTTTTAACAAACTTCTGAGTCAGCACTTTCAAGATCCTGGTTTAGCTTTCGATGTTGTGAGGTTTACGCTCAACAATCTGGAAACCCTGTGTTACAAAACTAACATTCTGTCAAAGTATTTCCCAAACTTGTTCAAGTTGCTTGCATGGCATCCCAGAACTTTCCTTGCAGAATTTACAGAACTGTTGCCTGCCTTTATGTCTCAGACAACATCCATGGAGGTATTTCATGCTTTGTTAGACTTACCCTGTATGACAGCAGCTTTAGAAACCATAGAAAGGACACAGAAAATGGAACTGCAGATGTCCTCACTTTTGGCTTCCATTGACATTGAACCTAGTGTGTCCTCAGAGGCTTATCAAAACCCTTTATATCATCCATTGTTCAACTTTGTTACTAGAGCTGAAGCAGGGTGTGGAGACACCATTAACAGACTGTCAGCACTTCACCATGTATTACAAGATCAAAAAACAAATCCAAGAGTCAAAGTATGTGGTCAGACTGTTTCTACTCTTCTGAGAGTTTGGTTTTCTGTTATATTAGAAGAAGTAGATGATGGGTTTGCTTCACAGTTGTTACCAGCTCTGTTGGAAAGATCAGGACTTCTGTATGATATACCTGAAATCAGTTACCAGCTTGATATTAAACAGTATGTCTGGGCTGTTGGTGAATTTTGTTCAGTGCAGTTTCATGTAAAATGTACGGCTGATTTGATTGGTCAGTATTACGGAACTCTGGAAACATTGATCTACGAGGTGTCAGGTAACCTGACATCTGCAGCACCTCAGGAAAGAAGCGGGCCAAAGATCATGTCTGTGTTAATGTCAGCCATTTCCAAGCTTGCAACCAGGTGTCAAGATTTAATTCCAAGAGCTATTCTTTGCCTTACCAAGGTTGCTAGGCAACACATGAAGAATTATTTTGATAAAGAAGGGTCTGCCACTCTCGTGAGTCGAGCACAAGAACTAATAAACATACTAAAGTTACCCAACTTTGCTGCTCAGATTTTGAATCCATCACCAGAGATTGAATCAGGAAGGCAAGTTTTAAATTATGTAACTGTCCTGAATATTTATACAAAGTGTCATACTATATGGCACAAAGACAACACATCTCTTCCAATTATTCTGCGTCAAACTCACAGGCTTCTCAGTGTAAAATAATCAACTGTTCCTTCACAGAGAAAATAAAAATATAAAAACTGAACAAAATTATCACAGAAAATACAAGCACCAGTTGTATATTTCAGAGGATTTAATACTATGTCGGTTGTGCAATAAATATTTTTTGTATCTTTTTCATTTTCATTTTTGTTATAATGAAGGAACTGCAGATGAGATTTATAAATTATTTATAATTATTATTATTATTTATTTTCTTTCAGGTCATTCTAAAACCTTGGTAGCTATTTCTCTCTAAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14764	SPG48	AP-5 complex subunit, vesicle trafficking	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028222	Family	AP-5 complex subunit zeta-1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46488	AP-5 COMPLEX SUBUNIT ZETA-1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0044599	Cellular Component	AP-5 adaptor complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf159_1.27 global RNA-seq network